Browse Element(s) Details


Os.46422.1.S1_at

Description gb:AK120598.1
DB_XREF= gi:37990221
TID=Os.46422.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149C06, full insert sequence.
FL= gb:AK120598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2543011/11Photosystem I reaction centre subunit IV/PsaE family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed
LOC_Os07g25430Os.46422.1.S1_at11/117+14531621..14532691Photosystem I reaction centre subunit IV/PsaE family protein, expressed
LOC_Os07g25440Os.23952.1.S1_at11/117+14532905..14540052Ribosome biogenesis protein BOP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009538cellular_componentphotosystem I reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46422.1.S1_at--895--8471Chr07:14531682..14531706 (25 bp)
TGGCGAGCACCATTAACGTGGCGTC
LOC_Os07g25430
Os.46422.1.S1_at--519--1311Chr07:14531948..14532076 (25 bp)
AGAGGCACCAAGGTGAAGATCCTGA
LOC_Os07g25430
Os.46422.1.S1_at--543--2791Chr07:14532067..14532091 (25 bp)
AAGATCCTGAGGAGGGAGTCCTACT
LOC_Os07g25430
Os.46422.1.S1_at--1086--6091Chr07:14532082..14532106 (25 bp)
GAGTCCTACTGGTACAACGGCACTG
LOC_Os07g25430
Os.46422.1.S1_at--919--7831Chr07:14532092..14532116 (25 bp)
GGTACAACGGCACTGGCTCCGTCGT
LOC_Os07g25430
Os.46422.1.S1_at--903--4791Chr07:14532107..14532130 (24 bp)
GCTCCGTCGTCACCGTTGATCAGGA
LOC_Os07g25430
Os.46422.1.S1_at--502--6651Chr07:14532121..14532281 (25 bp)
GTTGATCAGGATCCCAACACTCGCT
LOC_Os07g25430
Os.46422.1.S1_at--1141--7871Chr07:14532297..14532321 (25 bp)
GGTTCGCCAAGGTGAACTACGCCGG
LOC_Os07g25430
Os.46422.1.S1_at--686--2451Chr07:14532332..14532356 (25 bp)
AACAACTACGCCCTGGACGAGATCC
LOC_Os07g25430
Os.46422.1.S1_at--68--6011Chr07:14532350..14532374 (25 bp)
GAGATCCAGGAGGTCAAATGATTTT
LOC_Os07g25430
Os.46422.1.S1_at--394--4771Chr07:14532479..14532503 (25 bp)
GCTGCTTGATCGAGCTTTGTGTGTA
LOC_Os07g25430
Target Sequence 
TGGCGAGCACCATTAACGTGGCGTCGGCCACCTCGAGGTTCCCGCCGCCAAGCCGCCTCCCATTGGCCCCAAGAGAGGCA
CCAAGGTGAAGATCCTGAGGAGGGAGTCCTACTGGTACAACGGCACTGGCTCCGTCGTCACCGTTGATCAGGATCCCAAC
ACTCGCTACCCGGTGGTGGTTCGGTTCGCCAAGGTGAACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGAT
CCAGGAGGTCAAATGATTTTAATTCGGATGGATCGTCGTCGAGCTGGAGCTGCAAAGAATCATCTTAAATTGATCACGGA
GTGAGGAGAGGATGCATGTCGTACATGTGGAAGAAATTAATTAAGCTGCTTGATCGAGCTTTGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis