Browse Element(s) Details


Os.46474.1.S1_at

Description gb:AK073197.1
DB_XREF= gi:32983220
TID=Os.46474.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46474 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine peptidase (OSJNBa0055O03.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022B10, full insert sequence.
FL= gb:AK073197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3678011/11prolyl carboxypeptidase like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed
LOC_Os10g36830OsAffx.30694.1.S1_at11/1110+19386195..19390452hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46474.1.S1_at--773--4771Chr10:19360879..19360903 (25 bp)
GCTGCTGGATTTCAGATTTTCTCAC
LOC_Os10g36780
Os.46474.1.S1_at--818--3431Chr10:19360891..19360915 (25 bp)
CAGATTTTCTCACTGTTGTCCTGAA
LOC_Os10g36780
Os.46474.1.S1_at--1076--10571Chr10:19360897..19360921 (25 bp)
TTCTCACTGTTGTCCTGAATGCTAA
LOC_Os10g36780
Os.46474.1.S1_at--334--8711Chr10:19360907..19360931 (25 bp)
TGTCCTGAATGCTAAATTGATACTC
LOC_Os10g36780
Os.46474.1.S1_at--611--10772Chr10:19360923..19360947 (25 bp)
TTGATACTCACATTTTTTTCCCGAT
LOC_Os10g36780
Os.46474.1.S1_at--768--4991Chr10:19360951..19360975 (25 bp)
GCATGAAAAATGGTGCAGCTTCTAA
LOC_Os10g36780
Os.46474.1.S1_at--153--9831Chr10:19362290..19362314 (25 bp)
TAAACACAGTTACACAGACCAATCT
LOC_Os10g36780
Os.46474.1.S1_at--180--2151Chr10:19362303..19362327 (25 bp)
ACAGACCAATCTACGGTATCCATTG
LOC_Os10g36780
Os.46474.1.S1_at--1127--7851Chr10:19362317..19362341 (25 bp)
GGTATCCATTGATCTACTCTAGTAC
LOC_Os10g36780
Os.46474.1.S1_at--1073--9511Chr10:19362329..19362353 (25 bp)
TCTACTCTAGTACAATTAAGGTGGT
LOC_Os10g36780
Os.46474.1.S1_at--187--6331Chr10:19362370..19362394 (25 bp)
GATGAAGGTTAAGTTTTTCACGCAA
LOC_Os10g36780
Target Sequence 
GCTGCTGGATTTCAGATTTTCTCACTGTTGTCCTGAATGCTAAATTGATACTCACATTTTTTTCCCGATTTTGCATGAAA
AATGGTGCAGCTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAA
ATATATGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGAGAGGATGCCCCCAACTCCCTTTCA
GGATTGAAGGTGACCCTTCAAATTGCTCATCCCCGGCAGCCGTGAGCACAGTGAGGAAGCAGATCGCCAGCCACATCAGC
TTGTGGCTATCACAATGCCAAGAACCAACAAGGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTA
CACAGACCAATCTACGGTATCCATTGATCTACTCTAGTACAATTAAGGTGGTGTTTGAATGTCCTGAAGATGAAGGTTAA
GTTTTTCACGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46474.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis