Browse Element(s) Details


Os.46475.1.S1_at

Description gb:AK073088.1
DB_XREF= gi:32983111
TID=Os.46475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Cf2Cf5 disease resistance protein homolog (OSJNAa0079B05.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022N21, full insert sequence.
FL= gb:AK073088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0310011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03070OsAffx.32166.1218.S1_x_at3/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070OsAffx.1349.1.S1_x_at1/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03070OsAffx.30280.1.S1_x_at1/1110+1262999..1274485retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03080OsAffx.20783.1.S1_at11/1110+1276774..1278273hypothetical protein
LOC_Os10g03090NANA10+1285137..1285511expressed protein
LOC_Os10g03100Os.46475.1.S1_at11/1110+1292562..1295093Leucine Rich Repeat family protein, expressed
LOC_Os10g03110OsAffx.8551.1.S1_at11/1110+1295672..1300612retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03120OsAffx.8550.1.S1_at11/1110+1302208..1304668retrotransposon protein, putative, unclassified
LOC_Os10g03130OsAffx.8549.1.S1_at11/1110+1306156..1308012transposon protein, putative, unclassified
LOC_Os10g03140OsAffx.422.1.S1_at11/1110+1309007..1309645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03150Os.24831.3.S1_s_at10/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.1.S1_x_at8/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.3.S1_x_at6/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.4.S1_x_at2/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.55127.1.S1_at1/1110+1314732..1317041retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46475.1.S1_at--1039--10011Chr10:1294609..1294633 (25 bp)
TAGAATCACTCGACCTCTCAAGGAA
LOC_Os10g03100
Os.46475.1.S1_at--56--7251Chr10:1294650..1294674 (25 bp)
GTCCCATCAAGCTTGACAGATCTTA
LOC_Os10g03100
Os.46475.1.S1_at--441--9791Chr10:1294681..1294705 (25 bp)
TAAGCTACCTGGACCTATCGTACAA
LOC_Os10g03100
Os.46475.1.S1_at--392--5511Chr10:1294717..1294741 (25 bp)
GAAAAGTTCCATCCGGACGCCAACT
LOC_Os10g03100
Os.46475.1.S1_at--814--4391Chr10:1294735..1294759 (25 bp)
GCCAACTTGACACCTTGTACTTAGA
LOC_Os10g03100
Os.46475.1.S1_at--455--831Chr10:1294777..1294801 (25 bp)
ATGGAAACATTGGTCTTTGTGGCCC
LOC_Os10g03100
Os.46475.1.S1_at--317--8411Chr10:1294797..1294821 (25 bp)
GGCCCTCCTCTTCAAAGGAATTGTT
LOC_Os10g03100
Os.46475.1.S1_at--468--7932Chr10:1294871..1294895 (25 bp)
GGATTCCAATTCAATGTTCTTTTAC
LOC_Os10g03100
Os.46475.1.S1_at--1103--811Chr10:1294897..1294921 (25 bp)
ATGGTCTTGCATCAGGTTTTGTTGT
LOC_Os10g03100
Os.46475.1.S1_at--1029--7311Chr10:1294942..1294966 (25 bp)
GTGCTCTGCTATTCCACAAGTCATG
LOC_Os10g03100
Os.46475.1.S1_at--518--8051Chr10:1294966..1294990 (25 bp)
GGAGAGTCACTTATTTCTGCCTTGT
LOC_Os10g03100
Target Sequence 
TAGAATCACTCGACCTCTCAAGGAACTACCTTTGTGGTGANGTCCCATCAAGCTTGACAGATCTTACATATTTAAGCTAC
CTGGACCTATCGTACAACAATCTTACTGGAAAAGTTCCATCCGGACGCCAACTTGACACCTTGTACTTAGAGAATCCATC
CATGTACAATGGAAACATTGGTCTTTGTGGCCCTCCTCTTCAAAGGAATTGTTCAAGCAATGGTTATGCACAAGGGCATG
GTGATCACAAAGGACAAGAGAAGGATTCCAATTCAATGTTCTTTTACTATGGTCTTGCATCAGGTTTTGTTGTTGGTTAT
TGGGTTGTGTTTTGTGCTCTGCTATTCCACAAGTCATGGAGAGTCACTTATTTCTGCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis