Browse Element(s) Details


Os.46518.1.S1_at

Description gb:AK069398.1
DB_XREF= gi:32979422
TID=Os.46518.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0078O01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011K09, full insert sequence.
FL= gb:AK069398.1 gb:AK065378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3564011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35570Os.46599.1.S1_at11/1110+18698524..18703936expressed protein
LOC_Os10g35580Os.6427.1.S1_at11/1110+18704280..18706702microtubule-associated EB1 family protein, putative, expressed
LOC_Os10g35604Os.31723.1.S1_at11/1110+18714919..18716653expressed protein
LOC_Os10g35630Os.9206.1.S1_at11/1110+18724059..18726439CBS domain-containing protein, putative, expressed
LOC_Os10g35640Os.46518.1.S1_at11/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35640Os.46382.2.S1_x_at1/1110+18727281..18729777Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g35650Os.53725.1.S1_x_at11/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.53725.1.S1_at10/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46649.1.S1_x_at4/1110+18737158..18738407expressed protein
LOC_Os10g35650Os.46382.2.S1_x_at2/1110+18737158..18738407expressed protein
LOC_Os10g35650OsAffx.14302.1.S1_at1/1110+18737158..18738407expressed protein
LOC_Os10g35660OsAffx.7993.1.S1_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35660OsAffx.7993.1.S1_x_at11/1110+18741606..18743550Myb-like DNA-binding domain containing protein
LOC_Os10g35670Os.16128.2.S1_at11/1110+18749054..18751998RNA-binding protein, putative, expressed
LOC_Os10g35680Os.46826.1.S1_x_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.1.S1_at11/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35680Os.46826.2.S1_at1/1110+18752888..18753633acetyltransferase, GNAT family protein, expressed
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46518.1.S1_at--442--10311Chr10:18729219..18729243 (25 bp)
TTTCTCCCTGAAAAGTTTTGCTCTG
LOC_Os10g35640
Os.46518.1.S1_at--711--3851Chr10:18729241..18729265 (25 bp)
CTGAAGTGAAATCCATCCTGTTTGA
LOC_Os10g35640
Os.46518.1.S1_at--544--31Chr10:18729298..18729322 (25 bp)
ATTGTTGGCCTTCTCACTGAATTAG
LOC_Os10g35640
Os.46518.1.S1_at--755--3151Chr10:18729337..18729361 (25 bp)
AATTCTGGACCACTCTATGTTTGGG
LOC_Os10g35640
Os.46518.1.S1_at--227--7671Chr10:18729360..18729384 (25 bp)
GGGATCACCTTTATCTGTTACATGT
LOC_Os10g35640
Os.46518.1.S1_at--133--6551Chr10:18729386..18729410 (25 bp)
GATTGCTAGGTACAAACTGCCCTTT
LOC_Os10g35640
Os.46518.1.S1_at--15--5031Chr10:18729528..18729552 (25 bp)
GCAGTGACAAAGATTCCCCTGTATG
LOC_Os10g35640
Os.46518.1.S1_at--475--9791Chr10:18729593..18729617 (25 bp)
TAAGCAGAGCTGGTGCTTACCTCTC
LOC_Os10g35640
Os.46518.1.S1_at--1011--4891Chr10:18729607..18729631 (25 bp)
GCTTACCTCTCCATGACTGATGATA
LOC_Os10g35640
Os.46518.1.S1_at--345--6471Chr10:18729628..18729652 (25 bp)
GATAAGCACTTCTCTCTCAAAGCAT
LOC_Os10g35640
Os.46518.1.S1_at--391--3291Chr10:18729645..18729669 (25 bp)
CAAAGCATGGTCTGTTTCCCTGTTT
LOC_Os10g35640
Target Sequence 
TTTCTCCCTGAAAAGTTTTGCTCTGAAGTGAAATCCATCCTGTTTGAAATGGCCTACAGTTATGCAGTTGTAACTGGCTA
TTGTTGGCCTTCTCACTGAATTAGTAATACAAACAAGAAATTCTGGACCACTCTATGTTTGGGGATCACCTTTATCTGTT
ACATGTGGATTGCTAGGTACAAACTGCCCTTTTTTTTGTCACACTATATCTGATTCCCTTCGAAGAAAAATTCCCAGATG
ATATTATAGTTCTCTAATTTTGCTACTTTTTGTAGCTTTGTTAGAACTAATTTATTATCTGCTAAACTTGCAGTGACAAA
GATTCCCCTGTATGATAAATAGCATAGTTAGCAGACTGTTTCACAGAGGTGCACTAAGCAGAGCTGGTGCTTACCTCTCC
ATGACTGATGATAAGCACTTCTCTCTCAAAGCATGGTCTGTTTCCCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis