Browse Element(s) Details


Os.46535.1.S1_at

Description gb:AK067154.1
DB_XREF= gi:32977172
TID=Os.46535.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0026O12.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097P22, full insert sequence.
FL= gb:AK067154.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3373011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33700Os.24026.1.S1_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33700Os.24026.2.S1_x_at8/1110+17443861..17447530pentatricopeptide, putative, expressed
LOC_Os10g33710Os.15594.1.S1_at11/1110+17449112..17463951expressed protein
LOC_Os10g33710Os.15594.1.S1_s_at11/1110+17449112..17463951expressed protein
LOC_Os10g33720Os.21896.1.S1_at11/1110+17464943..17470306dehydration-responsive protein, putative, expressed
LOC_Os10g33730Os.46535.1.S1_at11/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_x_at10/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33730Os.46535.2.S1_at9/1110+17469819..17473833PPR986-12, putative, expressed
LOC_Os10g33740OsAffx.92.1.S1_at11/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33740Os.47407.1.A1_at1/1110+17491072..17495708transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.1.S1_at11/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_at3/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33750OsAffx.31222.2.S1_x_at2/1110+17498005..17500496transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46535.1.S1_at--933--1711Chr10:17471232..17471256 (25 bp)
ACCACCATTCGCCAACCAATATATA
LOC_Os10g33730
Os.46535.1.S1_at--473--91Chr10:17471226..17471250 (25 bp)
ATTCGCCAACCAATATATACTATCT
LOC_Os10g33730
Os.46535.1.S1_at--709--9891Chr10:17471209..17471233 (25 bp)
TACTATCTTATGAGTCCAAGCCTGA
LOC_Os10g33730
Os.46535.1.S1_at--666--3531Chr10:17470888..17470912 (25 bp)
CATGCGCATGGATTATACGTGGATA
LOC_Os10g33730
Os.46535.1.S1_at--345--7951Chr10:17470868..17470892 (25 bp)
GGATATGGTGAGATCAGTAATGCTC
LOC_Os10g33730
Os.46535.1.S1_at--912--6551Chr10:17470803..17470827 (25 bp)
GATTACAGGTAACCTAACCTCGTGA
LOC_Os10g33730
Os.46535.1.S1_at--799--7811Chr10:17470796..17470820 (25 bp)
GGTAACCTAACCTCGTGATTGTCAT
LOC_Os10g33730
Os.46535.1.S1_at--805--2631Chr10:17470788..17470812 (25 bp)
AACCTCGTGATTGTCATGTATGCAT
LOC_Os10g33730
Os.46535.1.S1_at--1065--7111Chr10:17470776..17470800 (25 bp)
GTCATGTATGCATCTGTGTCTGATA
LOC_Os10g33730
Os.46535.1.S1_at--791--4971Chr10:17470767..17470791 (25 bp)
GCATCTGTGTCTGATATACGGTTGT
LOC_Os10g33730
Os.46535.1.S1_at--821--6451Chr10:17470756..17470779 (24 bp)
GATATACGGTTGTACTTCAACTTCG
LOC_Os10g33730
Target Sequence 
ACCACCATTCGCCAACCAATATATACTATCTTATGAGTCCAAGCCTGACTCAGATGGCAGCAGGAAGCCAACCCCAAATA
TCTTATGATGGTTACAAGAGACTGTACAGCAACCAAGTTAAGTTCTTTCCCATAACCTTCTTGAAGCACTCCATGATCTC
TTATATATACCATGATCGATGTGCTTCATGGGAAACTGGGAGCTCTGAGTTCTTGCAAAGATCAGATGGAGAAGGTGCAC
CTCTGGTCAGAATTAATCGGAAGAAAAGGTTGGTCTGGATGTGGCAGCTTGTGCTGACGCCATTTCAAGAAAAGTGATAT
GAATTATGCACATATCCTATAAAACATGCGCATGGATTATACGTGGATATGGTGAGATCAGTAATGCTCTTCAGCTAATG
ATTTTCAGGCAGCTGGTAACCCCGGGTATGATTACAGGTAACCTAACCTCGTGATTGTCATGTATGCATCTGTGTCTGAT
ATACGGTTGTACTTCAACTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis