Browse Element(s) Details


Os.46562.1.S1_at

Description gb:AK063749.1
DB_XREF= gi:32973767
TID=Os.46562.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein L11 (OSJNBa0006L06.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G08, full insert sequence.
FL= gb:AK063749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3287011/11ribosomal protein L11 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed
LOC_Os10g32890OsAffx.18496.1.S1_at11/1110+16883498..16884608hypothetical protein
LOC_Os10g32900Os.3195.2.S1_x_at11/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32900Os.52047.1.S1_x_at1/1110+16892289..16895208CCT motif family protein, expressed
LOC_Os10g32910OsAffx.18497.1.S1_at11/1110+16897157..16897627hypothetical protein
LOC_Os10g32920Os.3196.1.S1_at11/1110+16897967..1689997960S ribosomal protein L23, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46562.1.S1_at--1019--5531Chr10:16872668..16872692 (25 bp)
GAAACTCCTATGCAGGTTACCTTAA
LOC_Os10g32870
Os.46562.1.S1_at--360--6071Chr10:16872620..16872644 (25 bp)
GAGTTTGTAGTCAAGTCACCATCTG
LOC_Os10g32870
Os.46562.1.S1_at--1029--1071Chr10:16872543..16872567 (25 bp)
AGGGCACACTGTAGTGTCATCCCTT
LOC_Os10g32870
Os.46562.1.S1_at--620--10331Chr10:16872520..16872544 (25 bp)
TTTCACTTCGCCATGTCTACGAGAT
LOC_Os10g32870
Os.46562.1.S1_at--631--9911Chr10:16872470..16872494 (25 bp)
TACTGCAAGCACATGTCACTCGAGG
LOC_Os10g32870
Os.46562.1.S1_at--775--2151Chr10:16872422..16872446 (25 bp)
ACAGCCAACTCCATGGGCATTGAGA
LOC_Os10g32870
Os.46562.1.S1_at--347--2811Chr10:16872391..16872415 (25 bp)
AAGATCTATGAGCTGCTTGGCCCCA
LOC_Os10g32870
Os.46562.1.S1_at--223--6431Chr10:16872269..16872293 (25 bp)
GATCTTGAGAGTTCCATGCCTCTGA
LOC_Os10g32870
Os.46562.1.S1_at--885--10311Chr10:16872222..16872246 (25 bp)
TTTCTCTCTGCAATTCTGATCTGAA
LOC_Os10g32870
Os.46562.1.S1_at--942--8751Chr10:16872194..16872218 (25 bp)
TGTAGTTCCCACAAATCGTTCTCAC
LOC_Os10g32870
Os.46562.1.S1_at--1021--4011Chr10:16872178..16872202 (25 bp)
CGTTCTCACCGATGTCAATTTGTTC
LOC_Os10g32870
Target Sequence 
GAAACTCCTATGCAGGTTACCTTAACTGCCTACAAGGACAGCACATTCGAGTTTGTAGTCAAGTCACCATCTGTCTCATG
GTTCCTCAAGAAGGCCGCCGGGATTGAGACAGCCAGCGGCCGTCCAGGGCACACTGTAGTGTCATCCCTTTCACTTCGCC
ATGTCTACGAGATCGCGAAATTGAAGCAATCTGATCCCTACTGCAAGCACATGTCACTCGAGGCGCTGTGCAAGTCAATC
ATTGGCACAGCCAACTCCATGGGCATTGAGATTGTTAAAGATCTATGAGCTGCTTGGCCCCATCTTTGTCATGAGGGGAG
TTGGTGAGTTGCTTAATGATTTTGTGTATTACTAATTTTTAGTTGGGGAAGTAAATTGTGTCCTGGTTTATTGAGCAGAG
ATCTTGAGAGTTCCATGCCTCTGAAATTGCCTTCAGCACAGCTTTTTTTCTCTCTGCAATTCTGATCTGAAACATGTAGT
TCCCACAAATCGTTCTCACCGATGTCAATTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis