Browse Element(s) Details


Os.46594.3.S1_at

Description gb:NM_196739.1
DB_XREF= gi:37534837
TID=Os.46594.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46594 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0094K20.14), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g309442/11ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30910Os.6001.1.S1_at11/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30910Os.6001.2.S1_at1/1110+15791881..15801528transmembrane protein, putative, expressed
LOC_Os10g30930NANA10+15805796..15806734retrotransposon protein, putative, unclassified
LOC_Os10g30944Os.46594.2.S1_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.2.S1_x_at11/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.1.S1_at8/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30944Os.46594.3.S1_at2/1110+15811384..15820549ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed
LOC_Os10g30960OsAffx.30618.1.S1_at3/1110+15830346..15830753hypothetical protein
LOC_Os10g30970Os.46673.1.S1_x_at3/1110+15831971..15834247expressed protein
LOC_Os10g30970Os.27697.1.A1_x_at2/1110+15831971..15834247expressed protein
LOC_Os10g30980Os.7327.1.S1_a_at10/1110+15836922..15837839hypothetical protein
LOC_Os10g30980Os.49252.1.S1_x_at1/1110+15836922..15837839hypothetical protein
LOC_Os10g30990OsAffx.8073.1.S1_at11/1110+15841160..15844130transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46594.3.S1_at--434--10631Chr10:15820249..15820361 (25 bp)
TTCGTCAAGACGGTGTTCAGCTTCA
LOC_Os10g30944
Os.46594.3.S1_at--1099--2751Chr10:15820255..15820367 (25 bp)
AAGACGGTGTTCAGCTTCACCTGGA
LOC_Os10g30944
Os.46594.3.S1_at--351--1951NONE
ACTGGACTGGAGACGACTATCTTAA
NONE
Os.46594.3.S1_at--912--5771Chr10:15820424..15820565 (25 bp)
GAGACGACTATCTTAAAAGGTTGTT
NONE
Os.46594.3.S1_at--165--8771Chr10:15820562..15820586 (25 bp)
TGTTTTACCATTACCTCGGTGTCCT
NONE
Os.46594.3.S1_at--870--131Chr10:15820571..15820595 (25 bp)
ATTACCTCGGTGTCCTGGGTGGAAT
NONE
Os.46594.3.S1_at--395--5271Chr10:15820592..15820616 (25 bp)
GAATGAGCGGTTGTTTCATGTTGAT
NONE
Os.46594.3.S1_at--994--7911Chr10:15820600..15820624 (25 bp)
GGTTGTTTCATGTTGATATTGTCAC
NONE
Os.46594.3.S1_at--31--6531Chr10:15820614..15820634 (21 bp)
GATATTGTCACAGCGATCCGGGCAA
NONE
Os.46594.3.S1_at--1063--1631Chr10:15820625..15820711 (25 bp)
AGCGATCCGGGCAAATGTTCCTGAG
NONE
Os.46594.3.S1_at--870--551Chr10:15820695..15820715 (21 bp)
ATCCGGGCAAATGTTCCTGAGGATC
NONE
Target Sequence 
TTCGTCAAGACGGTGTTCAGCTTCACCTGGAGCTCAAGACTCAAAAGGTTCATTTATTTTTATCTTCACCAATTGGTTAC
TGGACTGGAGACGACTATCTTAAAAGGTTGTTTTACCATTACCTCGGTGTCCTGGGTGGAATGAGCGGTTGTTTCATGTT
GATATTGTCACAGCGATCCGGGCAAATGTTCCTGAGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46594.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis