Browse Element(s) Details


Os.46612.1.S1_x_at

Description gb:D16001
DB_XREF= gi:287197
DB_XREF=RICC2001A
CLONE=C2001A
TID=Os.46612.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46612 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0672D08.6 (P0672D08.6), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g010709/11expressed protein
LOC_Os05g013201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01010Os.24643.1.S1_at11/111+1..7364RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os01g01020NANA1+8174..9019cytochrome P450 family protein, putative
LOC_Os01g01030Os.33183.1.S1_at11/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01030Os.33183.2.S1_at10/111+9523..12619Monocopper oxidase precursor, putative, expressed
LOC_Os01g01040Os.27571.1.S1_at11/111+13123..17122expressed protein
LOC_Os01g01040Os.18676.1.S1_x_at2/111+13123..17122expressed protein
LOC_Os01g01050Os.27637.1.S1_at11/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01050Os.51208.1.S1_s_at1/111+19643..23696R3H domain containing protein, expressed
LOC_Os01g01060Os.4725.1.S1_at11/111+23940..2543740S ribosomal protein S5, putative, expressed
LOC_Os01g01070Os.26562.1.S1_at11/111+26620..31295expressed protein
LOC_Os01g01070Os.46612.1.S1_x_at9/111+26620..31295expressed protein
LOC_Os01g01080Os.21356.1.S1_at11/111+32416..37981Sphingosine-1-phosphate lyase, putative, expressed
LOC_Os01g01090NANA1+41397..44328retrotransposon protein, putative, unclassified
LOC_Os01g01100NANA1+44658..50214retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g01110OsAffx.30714.2.S1_s_at11/111+52716..54774hypothetical protein
LOC_Os01g01110OsAffx.12972.1.S1_at1/111+52716..54774hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46612.1.S1_x_at--145--9131Chr01:26746..26770 (25 bp)
TGCTGGGAAAGATCGTCATCGTCAT
LOC_Os01g01070
Os.46612.1.S1_x_at--685--3911Chr01:28059..28082 (24 bp)
CGGCCCTGGTGCTTATGGTATAACA
LOC_Os01g01070
Os.46612.1.S1_x_at--1054--2672Chr01:28340..28364 (25 bp)
AAGCGTGGCTTATCTGATGCCTGCG
LOC_Os01g01070
Os.46612.1.S1_x_at--68--5291NONE
GAATGTTAATGTTACAGTCATCCAT
NONE
Os.46612.1.S1_x_at--588--2551Chr01:30090..30114 (25 bp)
AACTCCTCTTCCAGCTATTGAATTG
LOC_Os01g01070
Os.46612.1.S1_x_at--748--9531Chr01:30208..30232 (25 bp)
TCTTTGCCTCCAAGTTCAGAACCGG
LOC_Os01g01070
Os.46612.1.S1_x_at--419--5431Chr01:30226..30250 (25 bp)
GAACCGGAGTTTTCTGGCCCTCGAT
LOC_Os01g01070
Os.46612.1.S1_x_at--434--8471Chr01:30240..30264 (25 bp)
TGGCCCTCGATCACCTGTAACAGAG
LOC_Os01g01070
Os.46612.1.S1_x_at--486--4951Chr01:30265..30360 (25 bp)
GCATCTAAGGTTGTGCATTCTCCTA
LOC_Os01g01070
Os.46612.1.S1_x_at--516--111Chr01:30352..30376 (25 bp)
ATTCTCCTACAACTATGTCGGCATC
LOC_Os01g01070
Os.46612.1.S1_x_at--34--5331NONE
GAAGGGTCCCAGGAGCTATCAAATG
NONE
Target Sequence 
TGCTGGGAAAGATCGTCATCGTCATCGGCTCCGGCCCTGGTGCTTATGGTATAACAGCTGTTGTTGCTGGGGCTATCGGC
TATTTATACATAAGGTGGAAGGGTTGGAAACTTTCTGATTTGATGTTTGTGACGAAGCGTGGCTTATCTGATGCCTGCGA
TGTGGTTGGCAAACAGTTGGAACATGTTTCAGAGAATGTTAATGTTACAGTCATCCATGAAGATATAAGTGCCTTCCAGG
AGGAAATGNANNNNNNNCNNNNNNNNGNTNNTNNTCNGGTCTTATCATCAACTCCTCTTCCAGCTATTGAATTGCCAGAG
AGAATTACAAGGGCTGCTTCTTTGCCTCCAAGTTCAGAACCGGAGTTTTCTGGCCCTCGATCACCTGTAACAGAGGCATC
TAAGGTTGTGCATTCTCCTACAACTATGTCGGCATCAGGACTGAGTATGCTAGTTGAAACATCAATGCCACCTAAAAGGG
NNNTNTNNNNNNNNNNNNNTTNNANNNNAGAAGGGTCCCAGGAGCTATCAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46612.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis