Browse Element(s) Details


Os.46646.1.S1_x_at

Description gb:NM_197307.1
DB_XREF= gi:37535973
TID=Os.46646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0005K07.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3675011/11hypothetical protein
LOC_Os09g387204/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36720OsAffx.19542.3.S1_x_at10/1110+19326578..19330800retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g36729OsAffx.3688.1.S1_x_at1/1110+19335623..19339255hypothetical protein
LOC_Os10g36740OsAffx.30693.1.S1_at10/1110+19341853..19343977Cytochrome P450 family protein
LOC_Os10g36750Os.46646.1.S1_x_at11/1110+19346385..19347071hypothetical protein
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46646.1.S1_x_at--897--611Chr10:19346897..19346921 (25 bp)
ATGCGGCCAGGGAGGCGTGACGGTT
LOC_Os10g36750
Os.46646.1.S1_x_at--415--5751Chr10:19346879..19346903 (25 bp)
GACGGTTGGCTGGATCGGCGCCAGT
LOC_Os10g36750
Os.46646.1.S1_x_at--951--3791Chr10:19346757..19346781 (25 bp)
CTCGCGTTCCTGTGACGCGCTGGAG
LOC_Os10g36750
Os.46646.1.S1_x_at--351--9351Chr10:19346719..19346743 (25 bp)
TCGCGGAGCTCCTCCGAGAGCACGG
LOC_Os10g36750
Os.46646.1.S1_x_at--227--5892Chr09:22255935..22255959 (25 bp)
GAGCTCGGGCTCTGGGAGTCGTGGA
LOC_Os09g38720
Os.46646.1.S1_x_at--554--1292Chr09:22255990..22256014 (25 bp)
AGATGGCCGGGCTCGGGTTCGGGAG
LOC_Os09g38720
Os.46646.1.S1_x_at--455--4091Chr10:19346506..19346530 (25 bp)
CGAAGAGTAGGCACGGCCGCGGCGT
LOC_Os10g36750
Os.46646.1.S1_x_at--303--7492Chr09:22256061..22256085 (25 bp)
GTGGTGCCGCTGCTCGAGAGCGTCG
LOC_Os09g38720
Os.46646.1.S1_x_at--911--4591Chr10:19346441..19346465 (25 bp)
GCGAAGCTCATCGAGCCGTATGTTT
LOC_Os10g36750
Os.46646.1.S1_x_at--151--531Chr10:19346432..19346456 (25 bp)
ATCGAGCCGTATGTTTCGGCGGCTG
LOC_Os10g36750
Os.46646.1.S1_x_at--1030--10272Chr09:22256125..22256149 (25 bp)
TTTCGGCGGCTGGTCTCCCGGTGCT
LOC_Os09g38720
Target Sequence 
ATGCGGCCAGGGAGGCGTGACGGTTGGCTGGATCGGCGCCAGTGCGGCCGGCGACCGACGTCCTCTCCGCGTCCTCTCCC
GCGCCGCCGCGACCCCGTCGCTGCCTGCGCATCCCCCGCCGATGCCGAGACTGCCTCCACCTCGCGTTCCTGTGACGCGC
TGGAGGCCGAGCGCGCCGTCGCGGAGCTCCTCCGAGAGCACGGGGCCTCCCCGGCTGATGCGGCTTCCATCGCCGCGCGC
GCCCCGGGGTACGCCGCCATGCTCGCCGACGGCGTCCGCGAGCTCGACGAGCTCGGGCTCTGGGAGTCGTGGAGCTCCGG
GGTTGGGGCGGGCCGCGAGGTGGAGATGGCCGGGCTCGGGTTCGGGAGGAAGGTGTACTACATGGGGAAGGCGAAGAGTA
GGCACGGCCGCGGCGTGGTGCCGCTGCTCGAGAGCGTCGGGGTGCGGCTCTCCTCCGCGAAGCTCATCGAGCCGTATGTT
TCGGCGGCTGGTCTCCCGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46646.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis