Browse Element(s) Details


Os.46648.1.S1_at

Description gb:AK120203.1
DB_XREF= gi:37989826
TID=Os.46648.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leaf protein (OSJNBa0078O01.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037L24, full insert sequence.
FL= gb:AK120203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3576011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35690Os.5981.1.S1_at11/1110+18754688..18758049ribosomal protein S18 containing protein, expressed
LOC_Os10g35710Os.10526.1.S1_a_at11/1110+18763069..18766056expressed protein
LOC_Os10g35720Os.11576.1.S1_a_at11/1110+18767214..18770999glutaredoxin-related protein, expressed
LOC_Os10g35730Os.15944.1.S1_a_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.15944.2.S1_x_at11/1110+18774478..18776095expressed protein
LOC_Os10g35730Os.25231.1.S1_x_at4/1110+18774478..18776095expressed protein
LOC_Os10g35740OsAffx.6879.1.S1_at11/1110+18778654..18778955hypothetical protein
LOC_Os10g35750Os.25231.1.S1_x_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.25231.1.S1_at11/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35750Os.15944.2.S1_x_at2/1110+18779352..18781429pentatricopeptide, putative, expressed
LOC_Os10g35760Os.46648.1.S1_at11/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35760Os.15944.2.S1_x_at1/1110+18782630..18784562pentatricopeptide, putative, expressed
LOC_Os10g35770Os.7675.1.S1_at11/1110+18800270..18803895expressed protein
LOC_Os10g35770Os.21300.2.S1_x_at1/1110+18800270..18803895expressed protein
LOC_Os10g35780OsAffx.18527.1.S1_at10/1110+18805819..18806873hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46648.1.S1_at--362--5551Chr10:18784075..18784099 (25 bp)
GAAACCTGACCTGGCAAATGTGCTG
LOC_Os10g35760
Os.46648.1.S1_at--420--5931Chr10:18784102..18784126 (25 bp)
GAGCATAAACTATTTCGCAGAGCAA
LOC_Os10g35760
Os.46648.1.S1_at--918--351Chr10:18784296..18784320 (25 bp)
ATAAGATCCTTGCTGGAGAAGTCCA
LOC_Os10g35760
Os.46648.1.S1_at--821--10071Chr10:18784330..18784354 (25 bp)
TAGGATTGCATAACGCGTATTACTG
LOC_Os10g35760
Os.46648.1.S1_at--737--1791Chr10:18784342..18784366 (25 bp)
ACGCGTATTACTGACCAATTTCTTT
LOC_Os10g35760
Os.46648.1.S1_at--1019--31Chr10:18784368..18784392 (25 bp)
ATTGTCCTTGTGTCAAGCAAGTGCA
LOC_Os10g35760
Os.46648.1.S1_at--205--7351Chr10:18784388..18784412 (25 bp)
GTGCAAACCAACTGGCTCATGGATT
LOC_Os10g35760
Os.46648.1.S1_at--309--10191Chr10:18784425..18784449 (25 bp)
TATAGATCGCTACATAACTGCTTAT
LOC_Os10g35760
Os.46648.1.S1_at--980--2511Chr10:18784455..18784479 (25 bp)
AACTTGCGTTCTTCTATGCATGTCA
LOC_Os10g35760
Os.46648.1.S1_at--855--10131Chr10:18784469..18784493 (25 bp)
TATGCATGTCATGGCGTCTTGGTGC
LOC_Os10g35760
Os.46648.1.S1_at--1122--7931Chr10:18784499..18784523 (25 bp)
GGATTTGTCTTCTCGTATGGTTATT
LOC_Os10g35760
Target Sequence 
GAAACCTGACCTGGCAAATGTGCTGATGAGCATAAACTATTTCGCAGAGCAAAAGAATGTAGAAGCAGCTGAGGAGATGG
CAAGCTTATTACAGAGNTTGGTTCCTCTGACAAGGGATGTTTACCATGGGTTACTGAAGACATATGTCAATGCAGGAGAA
CCAGCGTCAGACTTGCTTGATCGTATGAAAAAAGATGGCATCGAGGCTGATGAAGAAACAGATAAGATCCTTGCTGGAGA
AGTCCACTAGGTACGTAGGATTGCATAACGCGTATTACTGACCAATTTCTTTCATTGTCCTTGTGTCAAGCAAGTGCAAA
CCAACTGGCTCATGGATTTGAGTATTTGTCTATAGATCGCTACATAACTGCTTATATAGGAACTTGCGTTCTTCTATGCA
TGTCATGGCGTCTTGGTGCTGTGTGGATTTGTCTTCTCGTATGGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis