Browse Element(s) Details


Os.46683.1.S1_at

Description gb:CA755018
DB_XREF= gi:25799057
DB_XREF=BR030011000_PLATE_A11_81_084.ab1
CLONE=BR030011000_PLATE_A11_81_084.ab1
TID=Os.46683.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein (OSJNBb0058B20.4), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2590011/11disease resistance response protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25850OsAffx.18402.1.S1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25850Os.22789.1.A1_at11/1110+13061476..13070797CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os10g25870Os.46833.1.S1_at11/1110+13071280..13072064Dirigent-like protein, expressed
LOC_Os10g25880NANA10+13081191..13084243hypothetical protein
LOC_Os10g25890Os.1709.1.S1_x_at6/1110+13085193..13089835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25900Os.46683.1.S1_at11/1110+13091589..13092225disease resistance response protein, putative, expressed
LOC_Os10g25910OsAffx.8153.1.S1_at11/1110+13096417..13098097transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25920OsAffx.8152.1.S1_at11/1110+13100180..13101379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25930Os.46333.1.S1_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25930Os.46333.1.S1_x_at2/1110+13106703..13108209Cys/Met metabolism PLP-dependent enzyme family protein
LOC_Os10g25940NANA10+13112221..13112758hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46683.1.S1_at--139--5011Chr10:13092154..13092178 (25 bp)
GCATGGCGGCATCTCACCGTGCAAT
LOC_Os10g25900
Os.46683.1.S1_at--852--3631Chr10:13092036..13092060 (25 bp)
CTTCTACATGCACGAGTTCTTCAAC
LOC_Os10g25900
Os.46683.1.S1_at--566--651Chr10:13092029..13092053 (25 bp)
ATGCACGAGTTCTTCAACGGCGGGC
LOC_Os10g25900
Os.46683.1.S1_at--838--10611Chr10:13091951..13091975 (25 bp)
TTCGGCTTCGTCAGCGTGGTCGACG
LOC_Os10g25900
Os.46683.1.S1_at--154--8331Chr10:13091843..13091867 (25 bp)
GGCTCGGTCACGACGATGCTGGACT
LOC_Os10g25900
Os.46683.1.S1_at--927--611Chr10:13091828..13091852 (25 bp)
ATGCTGGACTTCGTGTTCACGGACG
LOC_Os10g25900
Os.46683.1.S1_at--775--871Chr10:13091700..13091724 (25 bp)
ATGGCGCGAGGGTACACGCTCAGCA
LOC_Os10g25900
Os.46683.1.S1_at--757--2171Chr10:13091687..13091711 (25 bp)
ACACGCTCAGCAGGACGGTGAAGAC
LOC_Os10g25900
Os.46683.1.S1_at--160--2171Chr10:13091651..13091675 (25 bp)
ACAGCCAGCTCATCCTCGAGTACGA
LOC_Os10g25900
Os.46683.1.S1_at--1040--9611Chr10:13091642..13091666 (25 bp)
TCATCCTCGAGTACGACGTCTACAT
LOC_Os10g25900
Os.46683.1.S1_at--981--4031Chr10:13091635..13091659 (25 bp)
CGAGTACGACGTCTACATTTCTCGC
LOC_Os10g25900
Target Sequence 
GCATGGCGGCATCTCACCGTGCAATCCTAGCCCTGATCCTCCTCTTCAGCTCGTCGGCGGCGACAATCGCGGCGGCGCAG
CCGGCCGCGGCAGACGGCGGGAGGACGACGCACCTCCACTTCTACATGCACGAGTTCTTCAACGGCGGGCCGAACGGCTC
GATGGCCAGGGTGGCCCCGCCGGCGCGCAGCGGCGGCTCGCTGTTCGGCTTCGTCAGCGTGGTCGACGACGCGCTCCGCG
AGGGCGCCGACCCGGCGTCCCGCCTGGTCGGGCGCGCGCAGGGGCTCGCCGCCGGCACGTCGCTCGCCGACGGCTCGGTC
ACGACGATGCTGGACTTCGTGTTCACGGACGGCCGTACAAGGGCAGCACGGTGGCGGCGTTCGGCGTCGGGCTGCCGCTG
CCCGGCGGCGCGGCGATGGAGCGGCCGGTGGTCGGCGGCACGGGCGCGTTCCGGATGGCGCGAGGGTACACGCTCAGCAG
GACGGTGAAGACGGCGGACCCNAACAGCCAGCTCATCCTCGAGTACGACGTCTACATTTCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis