Browse Element(s) Details


Os.46699.1.S1_at

Description gb:CB096805
DB_XREF= gi:27920997
DB_XREF=AF53-Rpf_08_D08_T7_026.ab1
CLONE=C0002768
TID=Os.46699.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46699 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome p450 (OSJNBa0015I18.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g191406/11Cytochrome P450 87A3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19090OsAffx.6700.1.S1_at11/1110+9392508..9392864hypothetical protein
LOC_Os10g19100OsAffx.18296.1.S1_at10/1110+9393041..9395481hypothetical protein
LOC_Os10g19110OsAffx.18297.1.S1_at11/1110+9396632..9398816Cytochrome P450, putative
LOC_Os10g19120NANA10+9402171..9405080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19130NANA10+9405396..9411506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g19140Os.46699.1.S1_at6/1110+9413046..9416353Cytochrome P450 87A3, putative, expressed
LOC_Os10g19150OsAffx.14524.1.S1_at3/1110+9422992..9423851retrotransposon protein, putative, unclassified
LOC_Os10g19160OsAffx.18298.1.S1_at11/1110+9425766..9429324Leucine Rich Repeat family protein
LOC_Os10g19180Os.18752.2.S1_x_at11/1110+9439423..9445160zinc finger family protein, putative, expressed
LOC_Os10g19180Os.18752.1.S1_at11/1110+9439423..9445160zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46699.1.S1_at--378--1891NONE
ACGTTATACACGAAGCTTTGAGGCT
NONE
Os.46699.1.S1_at--1066--8871Chr10:9413844..9413868 (25 bp)
TGAGGCTTGCTAGCATTACTCCGAT
LOC_Os10g19140
Os.46699.1.S1_at--887--8751Chr10:9414934..9414958 (25 bp)
TGTTCACCTAAACCCCGTGGTCTAT
LOC_Os10g19140
Os.46699.1.S1_at--879--931Chr10:9414960..9414984 (25 bp)
AGGACCCAATACATTCAATCCCTTG
LOC_Os10g19140
Os.46699.1.S1_at--960--931Chr10:9416016..9416040 (25 bp)
AGGAAGAATGGTGCTTTCTCCCGGC
LOC_Os10g19140
Os.46699.1.S1_at--242--8131NONE
GGACTAATGTACTTGGTTCAGTTAC
NONE
Os.46699.1.S1_at--563--1171NONE
AGTCAATGCTCGATGCTTTGATGTA
NONE
Os.46699.1.S1_at--357--3132Chr12:12587341..12587368 (24 bp)
AATTTCTTCACTTTGCTATATATGT
NONE
Os.46699.1.S1_at--718--231Chr12:7205624..7205698 (24 bp)
ATATATGTTGTGTGTGCCACCCAAA
NONE
Os.46699.1.S1_at--905--211NONE
ATTTGTATATGTTTGAGTGCTCGAA
NONE
Os.46699.1.S1_at--733--1411Chr10:9416278..9416302 (25 bp)
AGACAATTTTAGTCCTCGTATATTA
LOC_Os10g19140
Target Sequence 
ACGTTATACACGAAGCTTTGAGGCTTGCTAGCATTACTCCGATGATGTTTAGAGAAGCCATAGAGGATGTTCATATAAAA
GGTTTTGCTATTCCAAAAGNATCAAAAATTATGATTTGTCCTTCTACTGTTCACCTAAACCCCGTGGTCTATGAGGACCC
AATACATTCAATCCCTTGAGATGGAAGTTGGAAAGCGATCAAAGGAGGAAGAATGGTGCTTTCTCCCGGCCTACGATTTC
CCGAAGGTTTTCATATCCAACTTTTCCCAAAGGACTAATGTACTTGGTTCAGTTACTTTTAGCCCCTACAAAATAAATAA
TGTTCATGAGCATATATGTTTCAGATGCATAAAGTCAATGCTCGATGCTTTGATGTAATTTCTTCACTTTGCTATATATG
TTGTGTGTGCCACCCAAATAATATAAACAAATGTATAATTTGTATATGTTTGAGTGCTCGAAACTAAAGACAATTTTAGT
CCTCGTATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46699.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis