Browse Element(s) Details


Os.46716.2.S1_at

Description gb:NM_195064.1
DB_XREF= gi:37531487
TID=Os.46716.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0071I20.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071I20.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0887910/11Nucleotide-sensitive chloride conductance regulator family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08910Os.28943.1.S1_x_at1/1110+4586535..4589904retrotransposon protein, putative, unclassified
LOC_Os10g08920NANA10+4590530..4596470retrotransposon protein, putative, unclassified
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006884biological_processregulation of cell volume
GO:0005216molecular_functionion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46716.2.S1_at--507--572Chr10:4580900..4580924 (25 bp)
ATCCTTTTGATCTTATAGCATTAGT
LOC_Os10g08879
Os.46716.2.S1_at--328--6952Chr10:4580923..4580947 (25 bp)
GTAGATTTCAGTTTGTACGCAGCAA
LOC_Os10g08879
Os.46716.2.S1_at--16--10812Chr10:4580935..4580959 (25 bp)
TTGTACGCAGCAAACACCAGTGAAG
LOC_Os10g08879
Os.46716.2.S1_at--1020--2752Chr10:4581049..4581072 (24 bp)
AAGAGCTGGTACATAATTTTCAACT
LOC_Os10g08879
Os.46716.2.S1_at--531--3132Chr10:4581062..4581086 (25 bp)
AATTTTCAACTCAAGAGTGATCCTA
LOC_Os10g08879
Os.46716.2.S1_at--365--10032Chr10:4581085..4581109 (25 bp)
TAGTCTGGATATATCATTTGTCCTG
LOC_Os10g08879
Os.46716.2.S1_at--53--432Chr10:4581097..4581121 (25 bp)
ATCATTTGTCCTGTATGCTGGGTGG
LOC_Os10g08879
Os.46716.2.S1_at--807--4272Chr10:4581106..4581313 (25 bp)
CCTGTATGCTGGGTGGATTGAGACA
LOC_Os10g08879
Os.46716.2.S1_at--188--9292Chr10:4581335..4581359 (25 bp)
TCCGATGAATCAGACTCCGAAGTAA
LOC_Os10g08879
Os.46716.2.S1_at--762--8152Chr10:4581364..4581388 (25 bp)
GGAAACAGAGCTATCGAAAGTCACT
LOC_Os10g08879
Os.46716.2.S1_at--689--3551NONE
CATCTGATCCTTTGGATGGACTCTT
NONE
Target Sequence 
ATCCTTTTGATCTTATAGCATTAGTAGATTTCAGTTTGTACGCAGCAAACACCAGTGAAGAGCTGGTACATAATTTTCAA
CTCAAGAGTGATCCTAGTCTGGATATATCATTTGTCCTGTATGCTGGGTGGATTGAGACAGAAGATGGTTCTGATGAGGA
GTCCGATGAATCAGACTCCGAAGTAAATGTGGAAACAGAGCTATCGAAAGTCACTGAGATGCGTATCATACCATCTGATC
CTTTGGATGGACTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46716.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis