Browse Element(s) Details


Os.46724.1.S1_at

Description gb:NM_194805.1
DB_XREF= gi:37530969
TID=Os.46724.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46724 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 26S proteasome regulatory subunit S5A (OSJNAa0029P06.12), mRNA.
PROD=putative 26S proteasome regulatory subunit S5A
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g051809/1126S proteasome regulatory subunit S5A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05120NANA10+2484961..2485675hypothetical protein
LOC_Os10g05130Os.46725.1.S1_at9/1110+2491190..2492532expressed protein
LOC_Os10g05140NANA10+2493665..2494056hypothetical protein
LOC_Os10g05150OsAffx.30289.1.S1_at11/1110+2495127..2495342hypothetical protein
LOC_Os10g05160OsAffx.20753.1.S1_at11/1110+2502113..2504631Protein kinase domain containing protein
LOC_Os10g05170OsAffx.30290.1.S1_at11/1110+2508119..2508601serine threonine kinase, putative
LOC_Os10g05180Os.46724.1.S1_at9/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05180OsAffx.18166.1.S1_at2/1110+2509204..251567726S proteasome regulatory subunit S5A, putative
LOC_Os10g05190Os.47463.1.S1_x_at6/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.52305.2.S1_x_at5/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190Os.14491.2.S1_x_at4/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05190OsAffx.5780.1.A1_at3/1110+2517496..2528989transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05200Os.46847.1.S1_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05200Os.46847.2.S1_x_at11/1110+2533530..2535649F-box domain containing protein, expressed
LOC_Os10g05210Os.11061.1.S1_at11/1110+2538161..2541395F-box domain containing protein, expressed
LOC_Os10g05210Os.46074.1.A1_at6/1110+2538161..2541395F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0000502cellular_componentproteasome complex (sensu Eukaryota)
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
GO:0001653molecular_functionpeptide receptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46724.1.S1_at--1067--9911NONE
TACTGGCATTAAACAATATCCGCAA
NONE
Os.46724.1.S1_at--219--251NONE
ATATCCGCAAAGGACTGGAGAGATA
NONE
Os.46724.1.S1_at--1070--8531Chr10:2511337..2511361 (25 bp)
TGGAGAGATATGCTTTCAGTTTGAA
LOC_Os10g05180
Os.46724.1.S1_at--1007--9591Chr10:2511175..2511326 (25 bp)
TCATCAATTTGATATGCTGGCAAGG
LOC_Os10g05180
Os.46724.1.S1_at--494--5171Chr10:2511156..2511180 (25 bp)
GCAAGGGTGGCAGCAATGCAAATAC
LOC_Os10g05180
Os.46724.1.S1_at--1047--1471Chr10:2511149..2511169 (21 bp)
AGCAATGCAAATACAGGAGGTCCTG
LOC_Os10g05180
Os.46724.1.S1_at--684--971Chr10:2509650..2509671 (22 bp)
AGGAGGTCCTGTCCTAGCACACGCA
LOC_Os10g05180
Os.46724.1.S1_at--261--3891Chr10:2509642..2509666 (25 bp)
CTGTCCTAGCACACGCACGCGGAAG
LOC_Os10g05180
Os.46724.1.S1_at--857--2171Chr10:2509632..2509656 (25 bp)
ACACGCACGCGGAAGCTAGGGCACC
LOC_Os10g05180
Os.46724.1.S1_at--723--4151Chr10:2509343..2509367 (25 bp)
CGCGCTCTACCCCATGGTCAAGGAG
LOC_Os10g05180
Os.46724.1.S1_at--1058--1351Chr10:2509320..2509344 (25 bp)
AGAGCACGCAGCTCTCCTCTGATGT
LOC_Os10g05180
Target Sequence 
TACTGGCATTAAACAATATCCGCAAAGGACTGGAGAGATATGCTTTCAGTTTGAAGTGGAAGATATCATCAATTTGATAT
GCTGGCAAGGGTGGCAGCAATGCAAATACAGGAGGTCCTGTCCTAGCACACGCACGCGGAAGCTAGGGCACCCGCGGAGC
AGGGCTGAGGATGCGCGCGCGGCGCTTGTCGGGGATAGGAGCCGCGGAGGCGGCGGAGCCGCGCCGGGCCGGCTGAGGTG
GCTGAGGTGCGCGGAGGCGCGTGGAGCCATGGAGGCGGCGGATGCGCGCATGGCCGGTGGGGGCGGCGGGGCCACGCGGG
GGCGGGCGGGGCTGGTGGAGGCGCGTGGGGCCGGCAGAGGCGGCAGAGTCGCGCGTGGCCTCGCGCTCGTCCACCGCCTC
GTCGCCAACGGCGACCCGCGCTCTACCCCATGGTCAAGGAGAGCACGCAGCTCTCCTCTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis