Browse Element(s) Details


Os.46731.1.S1_at

Description gb:AK121168.1
DB_XREF= gi:37990791
TID=Os.46731.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46731 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein RPR1 (OSJNBa0087H07.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080L03, full insert sequence.
FL= gb:AK121168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0467411/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04620Os.52409.1.S1_s_at11/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04620Os.52409.1.S1_at6/1110+2185660..2190883hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g04630NANA10+2196166..2197055expressed protein
LOC_Os10g04640OsAffx.20761.1.S1_at11/1110+2199524..2203866retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g04660OsAffx.30279.1.A1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.6575.1.S1_at11/1110+2204917..2209015hypothetical protein
LOC_Os10g04660OsAffx.21673.1.S1_x_at2/1110+2204917..2209015hypothetical protein
LOC_Os10g04674Os.46731.1.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.1.S1_x_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04674Os.46731.2.S1_at11/1110+2210559..2215549NB-ARC domain containing protein, expressed
LOC_Os10g04690Os.46873.1.S1_a_at2/1110+2223366..2224991hypothetical protein
LOC_Os10g04700Os.46873.1.S1_a_at11/1110+2227150..2230121F-box domain containing protein, expressed
LOC_Os10g04710OsAffx.18134.1.S1_at11/1110+2232038..2232672hypothetical protein
LOC_Os10g04720Os.23264.1.A1_at10/1110+2233528..2236379Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46731.1.S1_at--230--5371Chr10:2211498..2211522 (25 bp)
GAAGAAATGTACGTCGCTCAACTAG
LOC_Os10g04674
Os.46731.1.S1_at--991--6991Chr10:2211490..2211514 (25 bp)
GTACGTCGCTCAACTAGTAATTCAT
LOC_Os10g04674
Os.46731.1.S1_at--306--7231Chr10:2211486..2211510 (25 bp)
GTCGCTCAACTAGTAATTCATATAT
LOC_Os10g04674
Os.46731.1.S1_at--1142--9591Chr10:2211469..2211493 (25 bp)
TCATATATGTTTTGCATTTTCAATA
LOC_Os10g04674
Os.46731.1.S1_at--380--4951Chr10:2211456..2211480 (25 bp)
GCATTTTCAATATATACATGGTAGA
LOC_Os10g04674
Os.46731.1.S1_at--706--9851Chr10:2211442..2211466 (25 bp)
TACATGGTAGAGCATACGAATGATG
LOC_Os10g04674
Os.46731.1.S1_at--464--151Chr10:2211410..2211434 (25 bp)
ATTTAATGTTCCTCTGACCTTTTCT
LOC_Os10g04674
Os.46731.1.S1_at--10--8811Chr10:2211404..2211428 (25 bp)
TGTTCCTCTGACCTTTTCTTTGCTA
LOC_Os10g04674
Os.46731.1.S1_at--674--4871Chr10:2211383..2211407 (25 bp)
GCTATATTTGAGCAATCTGATCCAG
LOC_Os10g04674
Os.46731.1.S1_at--336--5951Chr10:2211374..2211398 (25 bp)
GAGCAATCTGATCCAGCATTACAGT
LOC_Os10g04674
Os.46731.1.S1_at--444--3051Chr10:2211370..2211394 (25 bp)
AATCTGATCCAGCATTACAGTGTGC
LOC_Os10g04674
Target Sequence 
GAAGAAATGTACGTCGCTCAACTAGTAATTCATATATGTTTTGCATTTTCAATATATACATGGTAGAGCATACGAATGAT
GAATTAAAATTTAATGTTCCTCTGACCTTTTCTTTGCTATATTTGAGCAATCTGATCCAGCATTACAGTGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis