Browse Element(s) Details


Os.46738.1.S1_s_at

Description gb:AU032611
DB_XREF= gi:3768584
DB_XREF=AU032611
CLONE=S11462_1A
TID=Os.46738.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0023I19.5), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0269011/11hypothetical protein
LOC_Os10g429301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46738.1.S1_s_at--843--3751Chr10:1039935..1039959 (25 bp)
CTCATCAACACAACGTGCGGCCATG
LOC_Os10g02690
Os.46738.1.S1_s_at--471--2211Chr10:1039926..1039950 (25 bp)
ACAACGTGCGGCCATGCCCTTGAAG
LOC_Os10g02690
Os.46738.1.S1_s_at--844--8171Chr10:1039797..1039821 (25 bp)
GGAACTCGGTGCTCATGGAGGTCAT
LOC_Os10g02690
Os.46738.1.S1_s_at--464--4711Chr10:1039745..1039769 (25 bp)
GCTGGAAGAGCTTGTCATGGCCAAC
LOC_Os10g02690
Os.46738.1.S1_s_at--512--1451Chr10:1039674..1039698 (25 bp)
AGAAGCTCAGAGACCACGTCGAGGC
LOC_Os10g02690
Os.46738.1.S1_s_at--510--4471Chr10:1039169..1039193 (25 bp)
GCCTGCTCGAGCGTTGCGGCAAGTT
LOC_Os10g02690
Os.46738.1.S1_s_at--752--4691Chr10:1039154..1039178 (25 bp)
GCGGCAAGTTGCTGAGCAGCATCCA
LOC_Os10g02690
Os.46738.1.S1_s_at--623--8913Chr01:21884542..21884562 (21 bp)
TGAGCAGCATCCAGGCGTTCACAGC
NONE
Os.46738.1.S1_s_at--996--1671Chr10:1039103..1039127 (25 bp)
AGCCGTGCCAGATGTCCGTGCTTGA
LOC_Os10g02690
Os.46738.1.S1_s_at--423--9331Chr10:1039050..1039074 (25 bp)
TCGCTGTCGTCGTCGAGGTCAAAGC
LOC_Os10g02690
Os.46738.1.S1_s_at--35--9111Chr10:1038978..1039002 (25 bp)
TGCTCGAGCGCTGAGGCAAGCTGTT
LOC_Os10g02690
Target Sequence 
CTCATCAACACAACGTGCGGCCATGCCCTTGAAGCCCTTTGGAACTCGGTGCTCATGGAGGTCATGGGCGTCGGCGTGGA
GATGGAGGGATGGCTGGAAGAGCTTGTCATGGCCAACGAGGTGGAGGCGAAGGTGAGGTTGGCCATGGAGTCCGAGCAAG
GAAAGAAGCTCAGAGACCACGTCGAGGCGCGCANNNANNNCNNNNNCNNGNNNNGNNNNNNNGCAGCGCGCTGCCCCGAC
GAGCTCCGGACTTACCGCGGCCTGCTCGAGCGTTGCGGCAAGTTGCTGAGCAGCATCCAGGCGTTCACAGCTGGCGACGA
CCAGCAGCCGTGCCAGATGTCCGTGCTTGACGCGGCGGCATTCCTCGCCGACGAGGACTCGCTGTCGTCGTCGAGGTCAA
AGCGCACCATCTTCACGCCCGCCCTGACGAGCTCCGGACTGACCGCGGCCTGCTCGAGCGCTGAGGCAAGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46738.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis