Browse Element(s) Details


Os.46775.1.S1_at

Description gb:AK111641.1
DB_XREF= gi:37988304
TID=Os.46775.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124B18, full insert sequence.
FL= gb:AK111641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2199011/11PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21970Os.53575.1.S1_s_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21970Os.53575.1.S1_at11/113+12566381..12568598bHLH transcription factor bHLH033, putative, expressed
LOC_Os03g21980Os.49477.1.S1_at11/113+12570504..12574469tRNA pseudouridine synthase family protein, expressed
LOC_Os03g21990Os.46775.1.S1_at11/113+12578330..12584633PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed
LOC_Os03g22010Os.11561.2.S1_a_at11/113+12590649..12595998Peroxidase 2 precursor, putative, expressed
LOC_Os03g22020Os.12843.1.S1_at11/113+12596935..12598451Peroxidase 52 precursor, putative, expressed
LOC_Os03g22030OsAffx.25188.1.S1_at11/113+12602717..12604692hypothetical protein
LOC_Os03g22030OsAffx.20167.1.S1_x_at2/113+12602717..12604692hypothetical protein
LOC_Os03g22040Os.18531.1.S1_at11/113+12606123..12609182expressed protein
LOC_Os03g22050Os.8095.1.S4_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S3_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S2_at11/113+12609538..12614015CIPK-like protein 1, putative, expressed
LOC_Os03g22050Os.8095.1.S1_at10/113+12609538..12614015CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0009749biological_processresponse to glucose stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0017163molecular_functionnegative regulator of basal transcription activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46775.1.S1_at--726--6471Chr03:12584052..12584076 (25 bp)
GATACTGATCAGACACCTGGTGCAT
LOC_Os03g21990
Os.46775.1.S1_at--299--2191Chr03:12584158..12584182 (25 bp)
ACACTAGGGATTCCATGCATCGCCA
LOC_Os03g21990
Os.46775.1.S1_at--1052--831Chr03:12584187..12584211 (25 bp)
ATGGACCTGTCTGAATTTTGCCGTG
LOC_Os03g21990
Os.46775.1.S1_at--522--2251Chr03:12584218..12584242 (25 bp)
AAATCCTCCTTATCTACCGAACAGA
LOC_Os03g21990
Os.46775.1.S1_at--276--8391Chr03:12584288..12584312 (25 bp)
GGCGAACATATCTGGGTTTGCCCAT
LOC_Os03g21990
Os.46775.1.S1_at--592--7531Chr03:12584317..12584341 (25 bp)
GTGGCACAGCATTGCATTTTTCTTT
LOC_Os03g21990
Os.46775.1.S1_at--144--3591Chr03:12584376..12584400 (25 bp)
CATTGCATTCACATAGCTTCCGGAT
LOC_Os03g21990
Os.46775.1.S1_at--894--10151Chr03:12584411..12584435 (25 bp)
TATCGTTGGATGTAAAGCCCCTATA
LOC_Os03g21990
Os.46775.1.S1_at--898--7351Chr03:12584452..12584476 (25 bp)
GTGACTTGCACGTGCGTTGACATGT
LOC_Os03g21990
Os.46775.1.S1_at--298--7311Chr03:12584547..12584571 (25 bp)
GTGCGGCATCCTGTAAAGTTACTCT
LOC_Os03g21990
Os.46775.1.S1_at--18--8631Chr03:12584598..12584622 (25 bp)
TGGTGTTTCTATACCTGGGAGCAAA
LOC_Os03g21990
Target Sequence 
GATACTGATCAGACACCTGGTGCATCTAATTTCAGACAGGGTACTTTTAACTCCCTAAATACCTATGTTGTTGTAGTGTT
TATGCTAAATTCAAATTGGTTGAATCACACTAGGGATTCCATGCATCGCCATGGAATGGACCTGTCTGAATTTTGCCGTG
CTTCGCAAATCCTCCTTATCTACCGAACAGAATATTGACTGTAAGAAGTTTTCATATATTAGAAGAGTTTCCTCTTGGCG
AACATATCTGGGTTTGCCCATAGTTGTGGCACAGCATTGCATTTTTCTTTCTATTCTTTTCTTTTCATTTTTTTTTGGAG
AGGGCATTGCATTCACATAGCTTCCGGATAATATAATCCTATCGTTGGATGTAAAGCCCCTATAGGGCTTTAATCAGCAC
GTGACTTGCACGTGCGTTGACATGTGGAGCGGCGACACCAGAACTCCTGCCGGTCATGTATTGTATGTTTCAGTAAAGTT
ACTCTTCAAATTTTAGTGCGGCATCCTGTAAAGTTACTCTTAAAATTTATGCTCAATACTCCTATATGGTGTTTCTATAC
CTGGGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis