Browse Element(s) Details


Os.46787.1.S1_at

Description gb:AK060521.1
DB_XREF= gi:32970539
TID=Os.46787.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46787 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proteophosphoglycan (OSJNBa0055O03.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-C06, full insert sequence.
FL= gb:AK060521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3681011/11Plus-3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36760Os.8008.1.S1_a_at11/1110+19347504..19352784prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36770OsAffx.20203.1.S1_at7/1110+19353705..19354109hypothetical protein
LOC_Os10g36780Os.46474.2.S1_x_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36780Os.46474.1.S1_at11/1110+19357589..19362864prolyl carboxypeptidase like protein, putative, expressed
LOC_Os10g36800Os.20602.2.S1_x_at11/1110+19370747..19372927hAT family dimerisation domain containing protein
LOC_Os10g36810Os.46787.1.S1_at11/1110+19374212..19383870Plus-3 domain containing protein, expressed
LOC_Os10g36830OsAffx.30694.1.S1_at11/1110+19386195..19390452hypothetical protein
LOC_Os10g36839NANA10+19393048..19393293NA
LOC_Os10g36848Os.9727.1.S1_at11/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed
LOC_Os10g36848OsAffx.28081.1.S1_x_at1/1110+19398602..19405331Cytochrome P450 84A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46787.1.S1_at--28--2171Chr10:19383245..19383269 (25 bp)
ACACCAACAGCTAAATACTCATCAG
LOC_Os10g36810
Os.46787.1.S1_at--638--391Chr10:19383265..19383289 (25 bp)
ATCAGAAACCCCAAGGAGACAAGGA
LOC_Os10g36810
Os.46787.1.S1_at--187--2471Chr10:19383293..19383317 (25 bp)
AACAACACAAATTCTGCTGGCTGGG
LOC_Os10g36810
Os.46787.1.S1_at--625--5891Chr10:19383337..19383361 (25 bp)
GAGCTGGCATTCACCCTCAGGCAAT
LOC_Os10g36810
Os.46787.1.S1_at--878--10511Chr10:19383346..19383370 (25 bp)
TTCACCCTCAGGCAATGCGAGCAGC
LOC_Os10g36810
Os.46787.1.S1_at--77--9651Chr10:19383409..19383433 (25 bp)
TCAGAGCAGCGAACCATGGCGTGGT
LOC_Os10g36810
Os.46787.1.S1_at--969--851Chr10:19383424..19383448 (25 bp)
ATGGCGTGGTGGCTCAAATCATTCC
LOC_Os10g36810
Os.46787.1.S1_at--501--7531Chr10:19383432..19383456 (25 bp)
GTGGCTCAAATCATTCCAGGAGATC
LOC_Os10g36810
Os.46787.1.S1_at--872--9611Chr10:19383460..19383484 (25 bp)
TCATCGTCAAGAACATGGCAACGGT
LOC_Os10g36810
Os.46787.1.S1_at--898--2491Chr10:19383471..19383495 (25 bp)
AACATGGCAACGGTGGCTCGTCGAG
LOC_Os10g36810
Os.46787.1.S1_at--1030--8211Chr10:19383476..19383500 (25 bp)
GGCAACGGTGGCTCGTCGAGATCAT
LOC_Os10g36810
Target Sequence 
ACACCAACAGCTAAATACTCATCAGAAACCCCAAGGAGACAAGGANACAACAACACAAATTCTGCTGGCTGGGGAGACTC
TCTCGGAAACANGAGCTGGCATTCACCCTCAGGCAATGCGAGCAGCCGAGGCAGCCATTCTAGCCACCACCATGACCGGC
ACANTCAGAGCAGCGAACCATGGCGTGGTGGCTCAAATCATTCCAGGAGATCAGATCATCGTCAAGAACATGGCAACGGT
GGCTCGTCGAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46787.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis