Browse Element(s) Details


Os.46792.1.S1_at

Description gb:AK111107.1
DB_XREF= gi:32996316
TID=Os.46792.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome b-561 (OSJNBb0073N24.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A03, full insert sequence.
FL= gb:AK111107.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3603011/11Cytochrome b561 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35980Os.2597.1.S1_at11/1110+18900655..18903588senescence-associated family protein, putative, expressed
LOC_Os10g35990Os.2594.1.S1_at11/1110+18906761..18912315ATP-dependent RNA helicase ste13, putative, expressed
LOC_Os10g36000Os.46647.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36000Os.11939.1.S1_at11/1110+18915313..18917124Remorin, C-terminal region family protein, expressed
LOC_Os10g36010OsAffx.30684.1.S1_at9/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12308.1.S1_at3/1110+18922180..18923069hypothetical protein
LOC_Os10g36010OsAffx.12912.1.S1_at2/1110+18922180..18923069hypothetical protein
LOC_Os10g36020OsAffx.20220.1.S1_at1/1110+18925505..18925774hypothetical protein
LOC_Os10g36030Os.46792.1.S1_at11/1110+18926092..18928539Cytochrome b561 family protein, expressed
LOC_Os10g36050Os.46497.2.S1_at11/1110+18932862..18934452hypothetical protein
LOC_Os10g36050Os.46497.2.S1_x_at10/1110+18932862..18934452hypothetical protein
LOC_Os10g36060Os.2611.1.S1_a_at10/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.31528.1.S1_x_at3/1110+18946493..18951887Chorion family 2 protein, expressed
LOC_Os10g36060OsAffx.30685.1.S1_x_at2/1110+18946493..18951887Chorion family 2 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016021cellular_componentintegral to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0008805molecular_functioncarbon-monoxide oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46792.1.S1_at--263--9031Chr10:18927323..18927347 (25 bp)
TGCACTCCTGGGTTGGACTTGGAAC
LOC_Os10g36030
Os.46792.1.S1_at--1096--8411Chr10:18926466..18926490 (25 bp)
GGCCTTCTCGTCTACATATTAGCGT
LOC_Os10g36030
Os.46792.1.S1_at--1161--2071Chr10:18926453..18926477 (25 bp)
ACATATTAGCGTTGCTCGCGGCGGA
LOC_Os10g36030
Os.46792.1.S1_at--390--2691Chr10:18926412..18926436 (25 bp)
AAGCTCACCTTCCTTGAGGCCGGAG
LOC_Os10g36030
Os.46792.1.S1_at--126--8011Chr10:18926368..18926392 (25 bp)
GGAGGCCCTGCTTGTGAACTTCACC
LOC_Os10g36030
Os.46792.1.S1_at--933--8311Chr10:18926322..18926346 (25 bp)
GGCTCAGCCGTCGTGATGTATGTTA
LOC_Os10g36030
Os.46792.1.S1_at--723--10551Chr10:18926275..18926299 (25 bp)
TTCTCATGGGTATTCAGCAGTGCGC
LOC_Os10g36030
Os.46792.1.S1_at--448--1531Chr10:18926260..18926284 (25 bp)
AGCAGTGCGCAAGCCATGAGCCAGA
LOC_Os10g36030
Os.46792.1.S1_at--502--6311Chr10:18926237..18926261 (25 bp)
GATGAGCCATTGATCGATCCAGCTT
LOC_Os10g36030
Os.46792.1.S1_at--785--9611Chr10:18926210..18926234 (25 bp)
TCATCGGCTGTGTCTGTTGTATAAT
LOC_Os10g36030
Os.46792.1.S1_at--521--9011Chr10:18926177..18926201 (25 bp)
TGAATTATTCCCATAGCTGCTGCCT
LOC_Os10g36030
Target Sequence 
TGCACTCCTGGGTTGGACTTGGAACTATCTGTTTATNNNGNGNNNANNGNANANNNNNNNTNNNNANCTNNNTNNNNCCC
GGCGCTTCGCCGTCGCTCCGACGCGCCGCGCTCCCATGGCACGTCCGCTCGGGCCTTCTCGTCTACATATTAGCGTTGCT
CGCGGCGGAGCTGGGGTTCCTNGGAGAAGCTCACCTTCCTTGAGGCCGGAGGGCTCGGCAGGTACAGCTCGGAGGCCCTG
CTTGTGAACTTCACCGCCGTGNTCGTCATACTGCTGGGCTCAGCCGTCGTGATGTATGTTACTNCTCCGATGCACAATGA
ACATTCTCATGGGTATTCAGCAGTGCGCAAGCCATGAGCCAGATGAGCCATTGATCGATCCAGCTTCTTCATCGGCTGTG
TCTGTTGTATAATTGTTTTGCTGAATTATTCCCATAGCTGCTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis