Browse Element(s) Details


Os.46796.1.S1_at

Description gb:AK110328.1
DB_XREF= gi:32995537
TID=Os.46796.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46796 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-D09, full insert sequence.
FL= gb:AK110328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3217011/11Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32124OsAffx.32166.1218.S1_x_at10/1110+16544822..16553037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32140OsAffx.30634.1.S1_at2/1110+16556712..16557123hypothetical protein
LOC_Os10g32150OsAffx.18487.1.S1_x_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150OsAffx.18487.1.S1_at11/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.53480.1.S1_x_at5/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.56035.1.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32150Os.52587.2.S1_at1/1110+16558281..16561378retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g32160Os.46796.2.S1_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160Os.46796.2.S1_x_at11/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32160OsAffx.8050.1.S1_x_at1/1110+16563439..16565414Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.1.S1_at11/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170Os.46796.2.S1_x_at7/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32170OsAffx.8050.1.S1_x_at1/1110+16567293..16569410Xyloglucan galactosyltransferase KATAMARI 1, putative, expressed
LOC_Os10g32190OsAffx.6834.1.S1_at11/1110+16571924..16577087hypothetical protein
LOC_Os10g32199NANA10+16579892..16582096expressed protein
LOC_Os10g32210NANA10+16589834..16590547hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46796.1.S1_at--184--7491Chr10:16567433..16567457 (25 bp)
GTGGGATCCATTGTTCGCGTTCGGT
LOC_Os10g32170
Os.46796.1.S1_at--456--51Chr10:16567424..16567448 (25 bp)
ATTGTTCGCGTTCGGTTAGGTCATC
LOC_Os10g32170
Os.46796.1.S1_at--113--3971Chr10:16567416..16567440 (25 bp)
CGTTCGGTTAGGTCATCGTTTCTAT
LOC_Os10g32170
Os.46796.1.S1_at--1120--7811Chr10:16567406..16567430 (25 bp)
GGTCATCGTTTCTATTACTTTCTAC
LOC_Os10g32170
Os.46796.1.S1_at--996--6831Chr10:16567399..16567423 (25 bp)
GTTTCTATTACTTTCTACTGTCACA
LOC_Os10g32170
Os.46796.1.S1_at--902--10211Chr10:16567394..16567418 (25 bp)
TATTACTTTCTACTGTCACACTGTT
LOC_Os10g32170
Os.46796.1.S1_at--1006--3671Chr10:16567389..16567413 (25 bp)
CTTTCTACTGTCACACTGTTACACA
LOC_Os10g32170
Os.46796.1.S1_at--1115--2151Chr10:16567377..16567401 (25 bp)
ACACTGTTACACAATACAAGGTTAA
LOC_Os10g32170
Os.46796.1.S1_at--447--3191Chr10:16567366..16567390 (25 bp)
CAATACAAGGTTAATTACGTGTTTG
LOC_Os10g32170
Os.46796.1.S1_at--934--7591Chr10:16567331..16567355 (25 bp)
GGGAATACTTGTAATGCAATGGAAC
LOC_Os10g32170
Os.46796.1.S1_at--412--9751Chr10:16567303..16567327 (25 bp)
TAATTTCCAGTTTTACCAAAAGATG
LOC_Os10g32170
Target Sequence 
GTGGGATCCATTGTTCGCGTTCGGTTAGGTCATCGTTTCTATTACTTTCTACTGTCACACTGTTACACAATACAAGGTTA
ATTACGTGTTTGAAAGAAGTTTGGGAATACTTGTAATGCAATGGAACGAATAATTTCCAGTTTTACCAAAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis