Browse Element(s) Details


Os.46798.1.S1_at

Description gb:AK110942.1
DB_XREF= gi:32996151
TID=Os.46798.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0045B21.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-H02, full insert sequence.
FL= gb:AK110942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2738011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein
LOC_Os10g27420OsAffx.30562.1.S1_at11/1110+14131199..14132010hypothetical protein
LOC_Os10g27430OsAffx.18423.1.S1_at11/1110+14137596..14138003expressed protein
LOC_Os10g27440NANA10+14138694..14139250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46798.1.S1_at--746--3131Chr10:14113861..14113885 (25 bp)
AATTTTGGCGAATTGCTTATAGCTG
LOC_Os10g27380
Os.46798.1.S1_at--1033--291Chr10:14113879..14113903 (25 bp)
ATAGCTGATTCTGATCTGGCCGACA
LOC_Os10g27380
Os.46798.1.S1_at--911--9411Chr10:14113888..14113912 (25 bp)
TCTGATCTGGCCGACAAATTTCCGT
LOC_Os10g27380
Os.46798.1.S1_at--386--4231Chr10:14113909..14113933 (25 bp)
CCGTCAAATTCGCAGTGTTCAACTT
LOC_Os10g27380
Os.46798.1.S1_at--101--7431Chr10:14113923..14113947 (25 bp)
GTGTTCAACTTCGTACTCTTTTTCT
LOC_Os10g27380
Os.46798.1.S1_at--366--9911Chr10:14113936..14113960 (25 bp)
TACTCTTTTTCTGACCGTTGGCTGT
LOC_Os10g27380
Os.46798.1.S1_at--804--6611Chr10:14113952..14113976 (25 bp)
GTTGGCTGTTACTTCACTAGTTCTA
LOC_Os10g27380
Os.46798.1.S1_at--728--10051Chr10:14113969..14113993 (25 bp)
TAGTTCTACATATGTGAGACTGCAT
LOC_Os10g27380
Os.46798.1.S1_at--1065--5971Chr10:14113984..14114008 (25 bp)
GAGACTGCATTGTTTTTTGTACTAG
LOC_Os10g27380
Os.46798.1.S1_at--582--3071Chr10:14114013..14114037 (25 bp)
AATCTTGGTGATCTGTTGTTCTGAA
LOC_Os10g27380
Os.46798.1.S1_at--453--9852Chr10:14114045..14114069 (25 bp)
TAAATTTTGCCCTTGTGCCTTGAAG
LOC_Os10g27380
Target Sequence 
AATTTTGGCGAATTGCTTATAGCTGATTCTGATCTGGCCGACAAATTTCCGTCAAATTCGCAGTGTTCAACTTCGTACTC
TTTTTCTGACCGTTGGCTGTTACTTCACTAGTTCTACATATGTGAGACTGCATTGTTTTTTGTACTAGTATTAATCTTGG
TGATCTGTTGTTCTGAAATGCTTATAAATTTTGCCCTTGTGCCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis