Browse Element(s) Details


Os.46853.1.S1_at

Description gb:AK107379.1
DB_XREF= gi:32992588
TID=Os.46853.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029P06.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-B12, full insert sequence.
FL= gb:AK107379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g049809/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04910OsAffx.20755.1.S1_at11/1110+2385813..2388563hypothetical protein
LOC_Os10g04919OsAffx.403.1.S1_at11/1110+2389554..2389722NA
LOC_Os10g04930OsAffx.20755.1.S1_at1/1110+2392842..2393390hypothetical protein
LOC_Os10g04940OsAffx.20755.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04940Os.46727.1.S1_at1/1110+2395859..2396574hypothetical protein
LOC_Os10g04950OsAffx.27750.1.S1_x_at1/1110+2397028..2397471hypothetical protein
LOC_Os10g04960Os.46856.1.S1_at1/1110+2400239..2400638hypothetical protein
LOC_Os10g04980Os.46853.2.S1_x_at11/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.46853.1.S1_at9/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980OsAffx.27750.1.S1_x_at2/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04980Os.36607.2.S1_x_at1/1110+2406236..2410713F-box domain containing protein, expressed
LOC_Os10g04990OsAffx.30285.1.S1_at11/1110+2414285..2416799hypothetical protein
LOC_Os10g05000Os.46564.1.S1_at1/1110+2420647..2423219F-box domain containing protein, expressed
LOC_Os10g05010Os.52741.1.S1_at11/1110+2429826..2432129expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46853.1.S1_at--935--7711Chr10:2409475..2409499 (25 bp)
GGGTGTTCGCTGTTCAGCTTGACAC
LOC_Os10g04980
Os.46853.1.S1_at--1010--3391Chr10:2409461..2409485 (25 bp)
CAGCTTGACACCATGAATTACCACA
LOC_Os10g04980
Os.46853.1.S1_at--1012--111Chr10:2409445..2409469 (25 bp)
ATTACCACAAGGTGCTTGGACCTGT
LOC_Os10g04980
Os.46853.1.S1_at--985--6311Chr10:2409411..2409435 (25 bp)
GATGCAATTCGTTTTTCCCTACAAA
LOC_Os10g04980
Os.46853.1.S1_at--964--2411Chr10:2409390..2409413 (24 bp)
AAAAGCTTCTTTCTCCCTCAAGGTG
LOC_Os10g04980
Os.46853.1.S1_at--845--10571NONE
TTCTCCCTCAAGGTGGAAGTGCAGC
NONE
Os.46853.1.S1_at--834--2611Chr10:2406362..2406386 (25 bp)
AACCGAGATTTTGCTCATTAAGCTA
LOC_Os10g04980
Os.46853.1.S1_at--916--10091Chr10:2406329..2406353 (25 bp)
TAGGCTGGCTGAAAACTCTCGGAAT
LOC_Os10g04980
Os.46853.1.S1_at--654--6631Chr10:2406280..2406304 (25 bp)
GTTGTTGTTTGATGAGACCTTAATT
LOC_Os10g04980
Os.46853.1.S1_at--236--7071Chr10:2406248..2406272 (25 bp)
GTAAGATGCACTTTTCTGTAATTAA
LOC_Os10g04980
Os.46853.1.S1_at--17--2511Chr10:2406225..2406249 (25 bp)
AACATGTGTGCTTCGGTATTTGCTT
NONE
Target Sequence 
GGGTGTTCGCTGTTCAGCTTGACACCATGAATTACCACAAGGTGCTTGGACCTGTTTGTAGGGGGATGCAATTCGTTTTT
CCCTACAAAAGCTTCTTTCTCCCTCAAGGTGGAAGTGCAGCCATGATTATGTAATTCTACTCCTTCCTGGGAAAAGTGGC
AATGGCAAGGTGATGACGTGAGAATAACCGAGATTTTGCTCATTAAGCTAATATATAATAGGCTGGCTGAAAACTCTCGG
AATTAGATGATTTATTTAAAGTAATTTGTTGTTGTTTGATGAGACCTTAATTAATTATAGTAAGATGCACTTTTCTGTAA
TTAACATGTGTGCTTCGGTATTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis