Browse Element(s) Details

Os.46871.1.S1_at

Description

gb:AK106453.1
DB_XREF= gi:32991662
TID=Os.46871.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0020E23.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F08, full insert sequence.
FL= gb:AK106453.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g03760	10/11	F-box domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g03720	OsAffx.20772.1.S1_at	11/11	10	+	1662167..1662628	hypothetical protein
LOC_Os10g03730	Os.46555.1.S1_x_at	10/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46555.1.S1_at	10/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46058.2.S1_x_at	5/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03730	Os.46058.1.S1_at	1/11	10	+	1665240..1668358	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.4.S1_x_at	11/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.1.S1_at	11/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03740	Os.46561.2.S1_at	3/11	10	+	1672479..1675372	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46058.2.S1_x_at	11/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46058.1.S1_at	11/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03750	Os.46555.1.S1_x_at	2/11	10	+	1679068..1681989	F-box domain containing protein, expressed
LOC_Os10g03760	Os.46871.1.S1_at	10/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03760	Os.46058.2.S1_x_at	1/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03760	Os.8362.2.S1_x_at	1/11	10	+	1684480..1687105	F-box domain containing protein, expressed
LOC_Os10g03770	OsAffx.30564.2.S1_s_at	11/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.2.S1_x_at	10/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.1.S1_s_at	6/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.1.S1_at	3/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03770	OsAffx.30564.3.S1_at	1/11	10	+	1688087..1688907	hypothetical protein
LOC_Os10g03780	Os.46561.3.S1_at	11/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.46561.2.S1_at	11/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.46561.4.S1_x_at	4/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	OsAffx.30264.1.S1_at	2/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03780	Os.8362.2.S1_x_at	1/11	10	+	1691966..1699100	F-box domain containing protein, expressed
LOC_Os10g03790	OsAffx.20771.1.S1_x_at	11/11	10	+	1699959..1700611	hypothetical protein
LOC_Os10g03790	OsAffx.20771.1.S1_at	11/11	10	+	1699959..1700611	hypothetical protein
LOC_Os10g03800	OsAffx.30262.1.S1_x_at	11/11	10	+	1701315..1701875	hypothetical protein
LOC_Os10g03800	OsAffx.30262.1.S1_at	11/11	10	+	1701315..1701875	hypothetical protein
LOC_Os10g03809	NA	NA	10	+	1706335..1706961	NA
LOC_Os10g03820	OsAffx.18116.1.S1_at	11/11	10	+	1710568..1711389	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46871.1.S1_at--353--965	1	Chr10:1685090..1685114 (25 bp)	TCAGTCTGACTCTCGGTCCATGGTG	LOC_Os10g03760
Os.46871.1.S1_at--561--539	1	Chr10:1685008..1685032 (25 bp)	GAAGCTAACCCTAGAACTCGCAATG	LOC_Os10g03760
Os.46871.1.S1_at--87--547	1	Chr10:1684894..1685019 (25 bp)	GAACTCGCAATGTATCGTACAGGAA	LOC_Os10g03760
Os.46871.1.S1_at--292--29	1	Chr10:1684746..1684770 (25 bp)	ATAGTGGAATGTCCTCTGTTCAGAT	LOC_Os10g03760
Os.46871.1.S1_at--37--251	1	Chr10:1684686..1684710 (25 bp)	AACATCCACTTTTCCAGTCTGAGGA	LOC_Os10g03760
Os.46871.1.S1_at--598--33	1	Chr10:1684640..1684664 (25 bp)	ATACATTCGGTGGTCATTCCATCCA	LOC_Os10g03760
Os.46871.1.S1_at--218--227	1	Chr10:1684613..1684637 (25 bp)	AAATCACTCTCTTTCAGCTACATTC	LOC_Os10g03760
Os.46871.1.S1_at--85--1053	1	Chr10:1684601..1684625 (25 bp)	TTCAGCTACATTCCTTGATTCTAGT	LOC_Os10g03760
Os.46871.1.S1_at--188--1003	1	Chr10:1684560..1684584 (25 bp)	TAGACTTCTTGGTCGGTGCTATGAC	LOC_Os10g03760
Os.46871.1.S1_at--649--667	2	Chr10:1684497..1684521 (25 bp)	GTTGCTTCTGTTTAAATACTCCATT	LOC_Os10g03760
Os.46871.1.S1_at--570--199	1	Chr10:1684480..1684504 (25 bp)	ACTCCATTTGGCCTATGTTCTGCTG	NONE

Target Sequence

TCAGTCTGACTCTCGGTCCATGGTGTCTGGATGCCAACTTCTATGGACTAATCGTCTTCCTTCAGAACTCACCAATATTG
GAGAAGCTAACCCTAGAACTCGCAATGTATCGTACAGGAAAATTACAAAGAATCATTGGCCAGATTGAAGAAAGATCATT
TACATGTGAGCACCTTACGAGTGTTGAAGTCATATGCTTGGAGGATGATCCCCTGGTCAACGACGTGGTCAACTTCTTTG
TGAATAGTGGAATGTCCTCTGTTCAGATTCATATCAAACAATGGAGCCAGAGCGAGTANGAGTAACATCCACTTTTCCAG
TCTGAGGACATATGAAACGTCAAAGGATCATACATTCGGTGGTCATTCCATCCAAAAAATCACTCTCTTTCAGCTACATT
CCTTGATTCTAGTAGGGTTTGAAAGCACATAGACTTCTTGGTCGGTGCTATGACGTGAGAACAAACAATCATAGTCCTAT
ACTTGTATATATGTTGCTTCTGTTTAAATACTCCATTTGGCCTATGTTCTGCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis