Browse Element(s) Details


Os.46873.3.S1_at

Description gb:NM_194770.1
DB_XREF= gi:37530899
TID=Os.46873.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0087H07.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0087H07.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g045401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04490OsAffx.18129.1.S1_at10/1110+2112993..2115820hypothetical protein
LOC_Os10g04500OsAffx.18128.1.S1_at11/1110+2117317..2117652hypothetical protein
LOC_Os10g04510OsAffx.18129.2.S1_at11/1110+2127512..2128549expressed protein
LOC_Os10g04520Os.19044.1.S1_at9/1110+2131120..2132645expressed protein
LOC_Os10g04530OsAffx.20763.1.S1_at11/1110+2132830..2134112hypothetical protein
LOC_Os10g04540Os.19044.1.S1_at2/1110+2135413..2136864hypothetical protein
LOC_Os10g04540Os.46873.3.S1_at1/1110+2135413..2136864hypothetical protein
LOC_Os10g04550OsAffx.18131.2.S1_at11/1110+2142237..2143126hypothetical protein
LOC_Os10g04560OsAffx.18131.1.S1_at11/1110+2147271..2148713hypothetical protein
LOC_Os10g04560OsAffx.18131.2.S1_at1/1110+2147271..2148713hypothetical protein
LOC_Os10g04570OsAffx.18131.3.S1_at11/1110+2153248..2154690NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46873.3.S1_at--596--10231Chr10:2225722..2225746 (25 bp)
TATTGGAATACAACCCTCCTGGTGT
NONE
Os.46873.3.S1_at--323--3191Chr10:2225680..2225704 (25 bp)
CAATCATTGGTGCTCTTGGAGTTGG
NONE
Os.46873.3.S1_at--246--2431Chr10:2225651..2225675 (25 bp)
AAAACTCTGGTTGCGCATGTATGCG
NONE
Os.46873.3.S1_at--1144--591Chr10:2225631..2225655 (25 bp)
ATGCGCCGACGAGAGGGTTCAATCA
NONE
Os.46873.3.S1_at--56--391Chr10:2225610..2225634 (25 bp)
ATCACAGTTTTCTTCCATTTTGCAT
NONE
Os.46873.3.S1_at--157--10011Chr10:2225560..2225584 (25 bp)
TAGCACACAATCATACTCTCTTGGC
NONE
Os.46873.3.S1_at--746--9891Chr10:2225547..2225571 (25 bp)
TACTCTCTTGGCAGGGAACATTTTG
NONE
Os.46873.3.S1_at--557--5211Chr10:2225477..2225501 (25 bp)
GAATTCTATAAATCCGTGGCACAAA
NONE
Os.46873.3.S1_at--553--1051Chr10:2225437..2225461 (25 bp)
AGGTGGTAACCATAAGCAGACTTAG
NONE
Os.46873.3.S1_at--600--1211Chr10:2225253..2225277 (25 bp)
AGTTCATAGGGACACTTGCCGCAGC
NONE
Os.46873.3.S1_at--632--212Chr10:2136476..2136495 (20 bp)
ATTTGGATGTCAATTTCTGGCTTGG
LOC_Os10g04540
Target Sequence 
TATTGGAATACAACCCTCCTGGTGTGCAGCCTGCTGTTCTTCCAATCATTGGTGCTCTTGGAGTTGGGAAGAAAACTCTG
GTTGCGCATGTATGCGCCGACGAGAGGGTTCAATCACAGTTTTCTTCCATTTTGCATTTGAATGAAGGTGATCTTTTGGG
AATAGCACACAATCATACTCTCTTGGCAGGGAACATTTTGATGGTTGTGGAGTTTGTTTCAGATGTGAATGAGATGAATT
GGGAGGAATTCTATAAATCCGTGGCACAAATGAATGAGGGAAGCAAGGTGGTAACCATAAGCAGACTTAGAAAATCAGAG
AAACTTGGAACTGTAAAGCCAATGTTTCTTAACAACCATTCAGATGAAGAATTGAGCTACCTCTTCAAAATGCTCGCATT
TGGAAGTGCGAACCCTAAGGACCATCCACGATTAGTACAAATATCTGAAGAAAATTGCCATGCAGATGCAGTTCATAGGG
ACACTTGCCGCAGCAAATGCTACTGCAGATGCATTGAGAGGGAATTTGGATGTCAATTTCTGGCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46873.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis