Browse Element(s) Details


Os.46874.2.S1_at

Description gb:AK106325.1
DB_XREF= gi:32991534
TID=Os.46874.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0079H13.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F01, full insert sequence.
FL= gb:AK106325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2238011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g245505/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g22354Os.10871.1.S1_at11/118+13339181..13346628Polyadenylate-binding protein 2, putative, expressed
LOC_Os08g22370OsAffx.29306.1.S1_at11/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.24405.1.S1_at3/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.39684.2.S1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.29667.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370OsAffx.7641.1.S1_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22370Os.38992.1.A1_x_at1/118+13355605..13358128hypothetical protein
LOC_Os08g22380Os.46874.2.S1_at11/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22380Os.46874.1.S1_x_at4/118+13362110..13366507retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22389NANA8+13372760..13373040hypothetical protein
LOC_Os08g22400OsAffx.31177.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400Os.52238.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400OsAffx.7216.1.S1_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22400OsAffx.31892.5.S1_x_at1/118+13383981..13388270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g22410NANA8+13390006..13393006retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46874.2.S1_at--723--8051Chr08:13362673..13362697 (25 bp)
GGAGATGCAACTCGAGCTCGCTGCA
LOC_Os08g22380
Os.46874.2.S1_at--416--9012Chr08:13362694..13362718 (25 bp)
TGCACACTCTTTTCTGGACTTTCAG
LOC_Os08g22380
Os.46874.2.S1_at--330--7091Chr08:13362725..13362749 (25 bp)
GTCAACAGGTCCGTGGTCGTGGAAA
LOC_Os08g22380
Os.46874.2.S1_at--1049--10512Chr08:13362802..13362826 (25 bp)
TTCAGCCGCGGGTGGTTCGCAAAAA
LOC_Os08g22380
Os.46874.2.S1_at--715--5591Chr08:13362936..13362960 (25 bp)
GAAATCAGCAAACTATTCGCCGGCC
LOC_Os08g22380
Os.46874.2.S1_at--912--3131Chr08:13362983..13363007 (25 bp)
AATTGCAGGCAAGCGGGCCACTACA
LOC_Os08g22380
Os.46874.2.S1_at--521--1271Chr08:13363085..13363109 (25 bp)
AGATCAGCACCTCAGGGTCAGCAAA
LOC_Os08g22380
Os.46874.2.S1_at--572--8972Chr08:13363128..13363152 (25 bp)
TGAACCATGTCACAGCCGAGGAGGC
LOC_Os08g22380
Os.46874.2.S1_at--773--3951Chr08:13363164..13363188 (25 bp)
CGGATGTTCTTGTTGGTACGCTACT
LOC_Os08g22380
Os.46874.2.S1_at--449--8592Chr08:13363177..13363201 (25 bp)
TGGTACGCTACTTGTCCATTCATAC
LOC_Os08g22380
Os.46874.2.S1_at--1043--112Chr08:13363194..13363218 (25 bp)
ATTCATACCCAGCTAGTGTGTTGTT
LOC_Os08g22380
Target Sequence 
GGAGATGCAACTCGAGCTCGCTGCACACTCTTTTCTGGACTTTCAGGACCTCGTCAACAGGTCCGTGGTCGTGGAAAGCA
AGATGAAGAACCTCGAGGCCGAGCGCAAGCGCAAGAAGGCTGCGCAGATTTCAGCCGCGGGTGGTTCGCAAAAACCCCGT
GGTTGGCAGCCGCCCCCTCCGCGTTTTCAAGCACCACCACCTCCTCGTCCACAAAGATTCGTGCCACGCCCTCCTTAGCA
GCGTGTCGCGCCTCCCGTGGGTGGAAATCAGCAAACTATTCGCCGGCCCGTTCGCTCCAACAACTGCTTCAATTGCAGGC
AAGCGGGCCACTACATCAACCAATGCCCGTACCCTCATCGTGCACAACTCCAAGGACCAAGACCAGCAGCACCACGTCCT
AATCCACCTCTCAGATCAGCACCTCAGGGTCAGCAAACTCAGAAGAGGGGTAGAGTGAACCATGTCACAGCCGAGGAGGC
GAACGATGCACCGGATGTTCTTGTTGGTACGCTACTTGTCCATTCATACCCAGCTAGTGTGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46874.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis