Browse Element(s) Details


Os.46880.1.S1_at

Description gb:AK106211.1
DB_XREF= gi:32991420
TID=Os.46880.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0023I19.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G08, full insert sequence.
FL= gb:AK106211.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0268010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46880.1.S1_at--676--4391Chr10:1037831..1037855 (25 bp)
GCCAACGAGCTGATGAGCCTTCGTA
LOC_Os10g02680
Os.46880.1.S1_at--240--8931Chr10:1037844..1037868 (25 bp)
TGAGCCTTCGTATGCTGGACAAGCA
LOC_Os10g02680
Os.46880.1.S1_at--203--10291Chr10:1037930..1037954 (25 bp)
TTTGCGTGGTTCGACCGTGATGGCA
LOC_Os10g02680
Os.46880.1.S1_at--530--2931Chr10:1037993..1038017 (25 bp)
AAGGAAGTGTTGCTCGCTGTTGCTA
LOC_Os10g02680
Os.46880.1.S1_at--69--9331Chr10:1038006..1038030 (25 bp)
TCGCTGTTGCTAGTGGGCTTGGATT
LOC_Os10g02680
Os.46880.1.S1_at--970--7571Chr10:1038020..1038044 (25 bp)
GGGCTTGGATTCTTGCTAGTGCAGA
LOC_Os10g02680
Os.46880.1.S1_at--558--1071Chr10:1038122..1038146 (25 bp)
AGGGAAAGGTTCCAGGCTCTTCCTG
LOC_Os10g02680
Os.46880.1.S1_at--72--3491Chr10:1038134..1038158 (25 bp)
CAGGCTCTTCCTGCAAACTAATTGA
LOC_Os10g02680
Os.46880.1.S1_at--20--10291Chr10:1038198..1038222 (25 bp)
TTTGCTACTTTTTGTCCTCTGTGAG
LOC_Os10g02680
Os.46880.1.S1_at--375--2891Chr10:1038255..1038279 (25 bp)
AAGGGTGATCTGCTTCTGCTCATGA
LOC_Os10g02680
Os.46880.1.S1_at--209--9631Chr10:1038274..1038298 (25 bp)
TCATGATCCGCTAAGAGCCTCAGAT
NONE
Target Sequence 
GCCAACGAGCTGATGAGCCTTCGTATGCTGGACAAGCACTTCGGCGACGACGAGGCCGTCATGAGCGCCGACGAGCTCGT
GAAGCTGTACCGCGGCCTGTTTGCGTGGTTCGACCGTGATGGCAGTGGCGCCGTTGAACTGGAGGAGTTTCGGGCTGAGA
TGAAGGAAGTGTTGCTCGCTGTTGCTAGTGGGCTTGGATTCTTGCTAGTGCAGATGGTGGTCGAGGATGGTNGGANNGNN
GNNNNNCNNCTNNNCNNGNNNNNNTANAGATTCAAACAATTGGAAAGACAAAGGGAAAGGTTCCAGGCTCTTCCTGCAAA
CTAATTGATTTTTCGAAAAACAAATGTTTGCACTGTCTTTTTTTTTTTGCTACTTTTTGTCCTCTGTGAGTGATAATGTG
ATATGGTGTGATTGAAGGTAGGAAGGGTGATCTGCTTCTGCTCATGATCCGCTAAGAGCCTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis