Browse Element(s) Details


Os.46898.1.S1_at

Description gb:AK102843.1
DB_XREF= gi:32988052
TID=Os.46898.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative GTP-binding protein (OSJNBa0018F16.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109P10, full insert sequence.
FL= gb:AK102843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3183011/11Ras-related protein Rab-18, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31790Os.15802.2.S1_x_at11/1110+16336424..16344008ubiquitin family protein, putative, expressed
LOC_Os10g31800NANA10+16344657..16345385hypothetical protein
LOC_Os10g31810Os.17674.1.S1_at11/1110+16346191..16348479expressed protein
LOC_Os10g31820Os.15104.1.S1_s_at11/1110+16357513..16364101glutamine synthetase, putative, expressed
LOC_Os10g31830Os.46898.1.S1_at11/1110+16364171..16368113Ras-related protein Rab-18, putative, expressed
LOC_Os10g31840OsAffx.30629.1.S1_at11/1110+16373378..16373719hypothetical protein
LOC_Os10g31850Os.7339.1.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31850Os.7339.2.S1_at11/1110+16375561..16379105CHY zinc finger family protein, expressed
LOC_Os10g31864OsAffx.20287.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.17184.1.S1_at11/1110+16380787..16413144expressed protein
LOC_Os10g31864Os.24870.1.S1_s_at1/1110+16380787..16413144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46898.1.S1_at--1070--5371Chr10:16365052..16365076 (25 bp)
GAAGAAGGGCTTGCCTTTGCAGAAG
LOC_Os10g31830
Os.46898.1.S1_at--610--6351Chr10:16365021..16365045 (25 bp)
GATGCCTATTTCTTGAGAGTAGCGC
LOC_Os10g31830
Os.46898.1.S1_at--312--7411Chr10:16364972..16364996 (25 bp)
GTGTTTTGAAGAACTCGCACTAAAG
LOC_Os10g31830
Os.46898.1.S1_at--1089--1251Chr10:16364512..16364536 (25 bp)
AGATTATGGATGTCCCTAGCCTCTT
LOC_Os10g31830
Os.46898.1.S1_at--599--9991Chr10:16364496..16364520 (25 bp)
TAGCCTCTTGGAGGAAGGCTCCTCT
LOC_Os10g31830
Os.46898.1.S1_at--361--2931Chr10:16364482..16364506 (25 bp)
AAGGCTCCTCTTCGGTTGTCAAAAG
LOC_Os10g31830
Os.46898.1.S1_at--993--7071Chr10:16364404..16364428 (25 bp)
GTCAATAGGTCATATGGCGTCCCAA
LOC_Os10g31830
Os.46898.1.S1_at--883--10091Chr10:16364392..16364416 (25 bp)
TATGGCGTCCCAAAGCAGATTGTGA
LOC_Os10g31830
Os.46898.1.S1_at--418--1251Chr10:16364376..16364400 (25 bp)
AGATTGTGACATTCCAACCCGAGCT
LOC_Os10g31830
Os.46898.1.S1_at--259--1811Chr10:16364360..16364384 (25 bp)
ACCCGAGCTGCTGTGTTGTGTTCTG
LOC_Os10g31830
Os.46898.1.S1_at--851--9331Chr10:16364182..16364206 (25 bp)
TCGCCGTAGGAATGTGCTGCTGTCA
LOC_Os10g31830
Target Sequence 
GAAGAAGGGCTTGCCTTTGCAGAAGAATCTGGATGCCTATTTCTTGAGAGTAGCGCGAAAACACGAGATAATGTTGAGAA
GTGTTTTGAAGAACTCGCACTAAAGATTATGGATGTCCCTAGCCTCTTGGAGGAAGGCTCCTCTTCGGTTGTCAAAAGGA
ACATTCTGAAGCAGAAGCAAGAAAGTCAAGCAAAGCATGGTGGCGGATGCTGTCAATAGGTCATATGGCGTCCCAAAGCA
GATTGTGACATTCCAACCCGAGCTGCTGTGTTGTGTTCTGTTTGTAAATGAGTTGTATTTAAATTGTCTGCGAGTAAATA
GGGGCGCAAAAAGGGATCAGCTTGTGAGGTTTTTGGAGAGTGATTAACATTGATTTGTACAAAGTACAACATGCTTCCTT
TTTTTTTTCTTTCTATTCATTTTTTTTATATCTTCGCCGTAGGAATGTGCTGCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis