Browse Element(s) Details


Os.4695.1.S1_s_at

Description gb:AK061842.1
DB_XREF= gi:32971860
TID=Os.4695.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-E06, full insert sequence.
FL= gb:AK061842.1 gb:AK099557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2894011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28390NANA3+16337530..16338018hypothetical protein
LOC_Os03g28400Os.3933.1.S1_a_at11/113+16338234..16341046Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os03g28910OsAffx.25270.3.S1_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28910OsAffx.25270.3.S1_x_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28920OsAffx.3356.1.S1_at11/113+16355344..16355721hypothetical protein
LOC_Os03g28930Os.38884.2.S1_x_at10/113+16357275..16360869transposon protein, putative, Mutator sub-class
LOC_Os03g28940Os.4695.1.S1_s_at11/113+16362456..16364801ZIM motif family protein, expressed
LOC_Os03g28950OsAffx.17052.1.S1_at9/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.17052.2.S1_at3/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.25414.1.S1_at1/113+16371414..16372751AC transposase, putative
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4695.1.S1_s_at--624--8811Chr03:16363227..16363251 (25 bp)
TGTTGCTCAGGCCAATGCCCCGAAA
LOC_Os03g28940
Os.4695.1.S1_s_at--746--2371Chr03:16363205..16363229 (25 bp)
AAACCTGTTCGTCCAAATGCTGCTG
LOC_Os03g28940
Os.4695.1.S1_s_at--709--9151Chr03:16363073..16363097 (25 bp)
TGCCTCAGGCTAGGAAGGCGTCGCT
LOC_Os03g28940
Os.4695.1.S1_s_at--800--4891Chr03:16363051..16363075 (25 bp)
GCTTCACCGGTTCCTCGAGAAAAGA
LOC_Os03g28940
Os.4695.1.S1_s_at--38--4431Chr03:16362843..16362867 (25 bp)
GCCATGGCTTGGGTTAGGACCTCAG
LOC_Os03g28940
Os.4695.1.S1_s_at--130--5931Chr03:16362801..16362825 (25 bp)
GAGCTTGCGGCAGGAATCGAGCCAA
LOC_Os03g28940
Os.4695.1.S1_s_at--573--3011Chr03:16362770..16362794 (25 bp)
AATGCTCAATTCTGAGATGCCCCTC
LOC_Os03g28940
Os.4695.1.S1_s_at--688--6031Chr03:16362757..16362781 (25 bp)
GAGATGCCCCTCTCATCAGATGATT
LOC_Os03g28940
Os.4695.1.S1_s_at--487--5611Chr03:16362672..16362696 (25 bp)
GACAAGGCGATGTTCTTCTGATATA
LOC_Os03g28940
Os.4695.1.S1_s_at--1034--5531Chr03:16362542..16362566 (25 bp)
GAAACCTCATTTGTACCAATTCAAT
LOC_Os03g28940
Os.4695.1.S1_s_at--72--10511Chr03:16362523..16362547 (25 bp)
TTCAATATCGTTTTGCTTTGGCATT
LOC_Os03g28940
Target Sequence 
TGTTGCTCAGGCCAATGCCCCGAAACCTGTTCGTCCAAATGCTGCTGATCTGCCTCAGGCTAGGAAGGCGTCGCTTCACC
GGTTCCTCGAGAAAAGAAAGGATCGCCTTCAGGCTAAAGCACCCTACCAGGGTTCCCCTTCAGATGCTTCTCCGGTCAAG
AAGGAGCTGCAGGAGAGTCAGCCATGGCTTGGGTTAGGACCTCAGGTTGCCGCTCCCGACCTGAGCTTGCGGCAGGAATC
GAGCCAATGAATCAATGCTCAATTCTGAGATGCCCCTCTCATCAGATGATTCAGTCATAGAGGTTATCACAACTCTTGAA
TTGGGTGTTTTGTGTTAGGAGATGATCCGATGACAAGGCGATGTTCTTCTGATATATATANNNNCTAGGATTGAATGTAA
AGAAAGTAGCTGATGATTATGACCAGTAATCTGAATCAAATTGCTATGATAGAAAGCAGAAGATTCTGTAATCAGTACAA
CCCAAGAAACCTCATTTGTACCAATTCAATATCGTTTTGCTTTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4695.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis