Browse Element(s) Details


Os.4698.1.S1_at

Description gb:AF309383.1
DB_XREF= gi:11177842
TID=Os.4698.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4698 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) clone S10202_1A putative glutathione S-transferase OsGSTF4 mRNA, complete cds.
PROD=putative glutathione S-transferase OsGSTF4
FL= gb:AK059985.1 gb:AK103927.1 gb:AF309383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7077011/11Glutathione S-transferase III, putative, expressed
LOC_Os11g245101/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70720Os.38191.2.S1_at11/111+41265313..41267845expressed protein
LOC_Os01g70720Os.10402.1.S1_x_at11/111+41265313..41267845expressed protein
LOC_Os01g70730Os.28450.1.S1_at10/111+41269394..41269818flowering promoting factor-like 1, putative, expressed
LOC_Os01g70740Os.21222.1.S1_s_at11/111+41273921..41276388expressed protein
LOC_Os01g70740Os.21222.1.S1_at10/111+41273921..41276388expressed protein
LOC_Os01g70740Os.6534.1.A1_at1/111+41273921..41276388expressed protein
LOC_Os01g70750Os.56332.1.S1_at1/111+41279715..41282588hypothetical protein
LOC_Os01g70760OsAffx.22699.1.S1_x_at2/111+41283204..41286511retrotransposon protein, putative, unclassified
LOC_Os01g70770Os.4698.1.S1_at11/111+41289312..41291089Glutathione S-transferase III, putative, expressed
LOC_Os01g70780Os.15888.1.A1_at11/111+41293537..41297904SVP1-like protein 2, putative, expressed
LOC_Os01g70790Os.11919.1.S1_at11/111+41300236..41301629XYPPX repeat family protein, expressed
LOC_Os01g70800Os.11148.1.S1_at11/111+41305292..41310419Mitochondrial carrier protein, expressed
LOC_Os01g70810Os.18365.1.S1_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed
LOC_Os01g70810Os.18365.1.S2_at11/111+41311305..41319819flowering-time protein isoform alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0019748biological_processsecondary metabolism
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004364molecular_functionglutathione transferase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4698.1.S1_at--188--9231Chr01:41289783..41289807 (25 bp)
TCCAGGCCGCACGTCAAGGCGTGGT
LOC_Os01g70770
Os.4698.1.S1_at--89--8631Chr01:41289762..41289786 (25 bp)
TGGTGGGACGACATCTCCTCGCGCC
LOC_Os01g70770
Os.4698.1.S1_at--927--7271Chr01:41289657..41289681 (25 bp)
GTGCCCGCATGGATATGGGACGATA
LOC_Os01g70770
Os.4698.1.S1_at--501--10471Chr01:41289622..41289646 (25 bp)
TTACTACTCATTAATGTACGCCGTT
LOC_Os01g70770
Os.4698.1.S1_at--415--6991Chr01:41289607..41289631 (25 bp)
GTACGCCGTTAATTATATGTCAAAT
LOC_Os01g70770
Os.4698.1.S1_at--559--10111Chr01:41289592..41289616 (25 bp)
TATGTCAAATACTGTGCTCGCGTTT
LOC_Os01g70770
Os.4698.1.S1_at--75--1971Chr01:41289582..41289606 (25 bp)
ACTGTGCTCGCGTTTTATCAATTCA
LOC_Os01g70770
Os.4698.1.S1_at--1082--4631Chr01:41289573..41289597 (25 bp)
GCGTTTTATCAATTCACATGCTTTG
LOC_Os01g70770
Os.4698.1.S1_at--21--9792Chr06:5080977..5081000 (23 bp)
TAAGGGTTGTTTAGGTCGCGAAATG
NONE
Os.4698.1.S1_at--398--74522Chr10:3715005..3715031 (23 bp)
GTGTCATATCGGACGTTTGACTGTC
NONE
Os.4698.1.S1_at--915--10751Chr01:41289477..41289501 (25 bp)
TTGACTGTCCGACCGGATGTCAAAA
LOC_Os01g70770
Target Sequence 
TCCAGGCCGCACGTCAAGGCGTGGTGGGACGACATCTCCTCGCGCCCGGCGTGGAAGAAGACCGCCGCCGCCATCCCCTT
CCCGCCGGCCGCCTGACCGCCGCCGCCGCTGCCGCCTCGCCGGCCGGTGCCCGCATGGATATGGGACGATAAATAATTTT
TTTACTACTCATTAATGTACGCCGTTAATTATATGTCAAATACTGTGCTCGCGTTTTATCAATTCACATGCTTTGAGATG
TGGAGTGACTCTAGTAAGGGTTGTTTAGGTCGCGAAATGGAAATTTTTGGGTGTCATATCGGACGTTTGACTGTCCGACC
GGATGTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis