Browse Element(s) Details


Os.4726.1.S1_at

Description gb:CB966587
DB_XREF= gi:30228697
DB_XREF=NL39_G05
CLONE=NL39_G05
TID=Os.4726.1
CNT=58
FEA=FLmRNA
TIER=Stack
STK=11
UG=Os.4726 (NCBI UniGene Cluster)
UG_TITLE=MRNA for ribosomal protein S15, complete cds
FL= gb:AK059157.1 gb:D10962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0866011/1140S ribosomal protein S15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified
LOC_Os07g08620NANA7+4441434..4442458retrotransposon protein, putative, unclassified
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified
LOC_Os07g08640Os.56343.1.S1_at3/117+4451901..4452899retrotransposon protein, putative, unclassified
LOC_Os07g08650Os.54836.1.S1_at11/117+4455911..4457525expressed protein
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4726.1.S1_at--910--9291Chr07:4459300..4459324 (25 bp)
TCCGCAACATGATCATTGTCCCTGA
LOC_Os07g08660
Os.4726.1.S1_at--137--8831Chr07:4459207..4459231 (25 bp)
TGATTGGTCACTACCTTGCGGAGTT
LOC_Os07g08660
Os.4726.1.S1_at--642--10711Chr07:4459192..4459216 (25 bp)
TTGCGGAGTTCTCCATCTCCTACAA
LOC_Os07g08660
Os.4726.1.S1_at--294--9251Chr07:4459175..4459199 (25 bp)
TCCTACAAGCCGGTTAAGCACGGTA
LOC_Os07g08660
Os.4726.1.S1_at--135--3771Chr07:4459125..4459149 (25 bp)
CTCTCGGTTCATCCCTCTCAAATGA
LOC_Os07g08660
Os.4726.1.S1_at--1090--2991Chr07:4459105..4459129 (25 bp)
AATGAGTCATGCAGCTTCTAGCCAT
LOC_Os07g08660
Os.4726.1.S1_at--793--5211Chr07:4459071..4459095 (25 bp)
GAATTCAGTGTTAAGCGCCCATGGC
LOC_Os07g08660
Os.4726.1.S1_at--952--851Chr07:4459051..4459075 (25 bp)
ATGGCTTGTCCTTCCAGTATCACTT
LOC_Os07g08660
Os.4726.1.S1_at--499--4351Chr07:4459038..4459062 (25 bp)
CCAGTATCACTTGTTTTTTGAGCAA
LOC_Os07g08660
Os.4726.1.S1_at--324--5951Chr07:4459019..4459043 (25 bp)
GAGCAAGTTATATACCTAAGGCATT
LOC_Os07g08660
Os.4726.1.S1_at--157--311Chr07:4459008..4459032 (25 bp)
ATACCTAAGGCATTTTGTTCTGTTT
LOC_Os07g08660
Target Sequence 
TCCGCAACATGATCATTGTCCCTGAGATGATCGGAAGCATCGTCGGTGTCTACAATGGCAAGACCTTCAACCAGGTTGAG
ATTAAGCCTGAGATGATTGGTCACTACCTTGCGGAGTTCTCCATCTCCTACAAGCCGGTTAAGCACGGTAGGCCCGGTAT
TGGTGCCACCCACTCCTCTCGGTTCATCCCTCTCAAATGAGTCATGCAGCTTCTAGCCATCCAGAATCAGAATTCAGTGT
TAAGCGCCCATGGCTTGTCCTTCCAGTATCACTTGTTTTTTGAGCAAGTTATATACCTAAGGCATTTTGTTCTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis