Browse Element(s) Details


Os.47290.1.S1_at

Description gb:CR282432
DB_XREF= gi:44668998
DB_XREF=CR282432
CLONE=p901d07p3
TID=Os.47290.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47290 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:P05203 (A.thaliana) H3_MAIZE HISTONE H3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3424010/11Histone H3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34270Os.49208.1.S1_at11/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34270Os.15523.1.S1_at1/114+20569171..20573241D-mannose binding lectin family protein, expressed
LOC_Os04g34280OsAffx.14130.1.S1_at11/114+20577517..20577999expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47290.1.S1_at--1059--471Chr04:20552896..20552920 (25 bp)
ATCTGTTCTTGGCAAACTGTGGGAT
LOC_Os04g34240
Os.47290.1.S1_at--555--1951Chr04:20552911..20552935 (25 bp)
ACTGTGGGATTTGTTTGTCTGTTTC
LOC_Os04g34240
Os.47290.1.S1_at--159--10791Chr04:20552925..20552949 (25 bp)
TTGTCTGTTTCGTGGGTTGTTTGAT
LOC_Os04g34240
Os.47290.1.S1_at--744--9411Chr04:20552934..20552958 (25 bp)
TCGTGGGTTGTTTGATGCTAGTATC
LOC_Os04g34240
Os.47290.1.S1_at--268--10271Chr04:20552944..20552968 (25 bp)
TTTGATGCTAGTATCTGAAGATGGT
LOC_Os04g34240
Os.47290.1.S1_at--580--6231NONE
GATGGTAGCTAGACAATACGTTTCT
NONE
Os.47290.1.S1_at--715--311Chr04:20552978..20553002 (25 bp)
ATACGTTTCTGTCAGTCTGCATGTC
LOC_Os04g34240
Os.47290.1.S1_at--1030--3871Chr04:20552986..20553010 (25 bp)
CTGTCAGTCTGCATGTCGATGGGTA
LOC_Os04g34240
Os.47290.1.S1_at--39--771Chr04:20552998..20553022 (25 bp)
ATGTCGATGGGTATGCGGATGATTT
LOC_Os04g34240
Os.47290.1.S1_at--390--8811Chr04:20553017..20553041 (25 bp)
TGATTTGGGAATCAACCACCCTATA
LOC_Os04g34240
Os.47290.1.S1_at--136--7611Chr04:20553023..20553047 (25 bp)
GGGAATCAACCACCCTATATTTCAT
LOC_Os04g34240
Target Sequence 
ATCTGTTCTTGGCAAACTGTGGGATTTGTTTGTCTGTTTCGTGGGTTGTTTGATGCTAGTATCTGAAGATGGTAGCTAGA
CAATACGTTTCTGTCAGTCTGCATGTCGATGGGTATGCGGATGATTTGGGAATCAACCACCCTATATTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis