Browse Element(s) Details


Os.47332.1.S1_at

Description gb:AK099672.1
DB_XREF= gi:32984881
TID=Os.47332.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47332 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069C23, full insert sequence.
FL= gb:AK099672.1 gb:AK103917.1 gb:AK103598.1 gb:AK073851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4831011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48280Os.15284.1.S1_at11/117+28847181..28850637expressed protein
LOC_Os07g48290Os.11068.3.S1_at9/117+28854206..28857841Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os07g48300OsAffx.28951.1.S1_at11/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48300Os.17977.1.S1_s_at10/117+28857334..28861514Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os07g48310Os.47332.1.S1_at11/117+28861864..28866934leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g48320Os.52112.1.S1_at11/117+28875588..28877720plant acid phosphatase family protein, expressed
LOC_Os07g48330OsAffx.16763.1.S1_at11/117+28880461..28884645Cytochrome P450 family protein, expressed
LOC_Os07g48340Os.14413.1.S1_at11/117+28887547..28890337Calcium-binding protein CAST, putative, expressed
LOC_Os07g48350Os.19006.1.S1_a_at11/117+28891407..28899269expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47332.1.S1_at--657--4291Chr07:28862424..28862448 (25 bp)
CCTCATGGAGATGCTTACCGGTAAA
LOC_Os07g48310
Os.47332.1.S1_at--106--6271Chr07:28862372..28862396 (25 bp)
GATGTCGTCGACCTACCAAGATGGG
LOC_Os07g48310
Os.47332.1.S1_at--286--1551Chr07:28862269..28862293 (25 bp)
AGCTTGTTCAGATGCTCCAGATAGC
LOC_Os07g48310
Os.47332.1.S1_at--1058--10731Chr07:28862075..28862262 (25 bp)
TTGCACATCAAGGTCTCCACAGATC
LOC_Os07g48310
Os.47332.1.S1_at--611--7991Chr07:28862188..28862212 (25 bp)
GGATGATCGAGGGACTGCGCCATTC
LOC_Os07g48310
Os.47332.1.S1_at--1012--1371Chr07:28862155..28862179 (25 bp)
AGAGCCGAGCTTCCTCTGATGAAAA
LOC_Os07g48310
Os.47332.1.S1_at--234--4331Chr07:28862111..28862135 (25 bp)
CCATCGGTTTAGTTATGTGCTCCTG
LOC_Os07g48310
Os.47332.1.S1_at--623--8691Chr07:28862096..28862120 (25 bp)
TGTGCTCCTGTGTTCATATGCCTCA
LOC_Os07g48310
Os.47332.1.S1_at--1056--251Chr07:28862081..28862105 (25 bp)
ATATGCCTCACCAAGCTGCGAGTTG
LOC_Os07g48310
Os.47332.1.S1_at--131--7811Chr07:28862007..28862031 (25 bp)
GGTCGACATTAGATGCAGCCTCAGA
LOC_Os07g48310
Os.47332.1.S1_at--402--7411Chr07:28861871..28861895 (25 bp)
GTGATTTCATTATTTCGGCCGAGTT
LOC_Os07g48310
Target Sequence 
CCTCATGGAGATGCTTACCGGTAAAGCTCCACTCCAGTCGCAGGGCAATGACGATGTCGTCGACCTACCAAGATGGGTGC
ACTCGGTGGTCAGAGAGGAGTGGACAGCCGAGGTGTTCGACGTCGAGCTGATCAAGCAGCAAAACATCGAGGAGGAGCTT
GTTCAGATGCTCCAGATAGCAATGGCTTGCACATCAAGGTCTCCACAGATCGACGCCCATCGATGGAGGATGTGATCAGG
ATGATCGAGGGACTGCGCCATTCTGCTTCAGAGAGCCGAGCTTCCTCTGATGAAAAGATGAAGGACTCCAATCCACCATC
GGTTTAGTTATGTGCTCCTGTGTTCATATGCCTCACCAAGCTGCGAGTTGCAGATCATTTGATTCTTAGCTAATTTGTGA
TTGAGTTCATGCTAAACATGGTCGACATTAGATGCAGCCTCAGAAAGCTGAGCATATTCTGATTGGAACTTATGAGTCTT
GAATTCTTGATTCTTGACAAGTGTAGGATTTTTTTCTCTGGGAATTTTGATTGTTGGAATTGTGCATTTTGTGGTGTGAT
TTCATTATTTCGGCCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis