Browse Element(s) Details


Os.47368.1.S1_x_at

Description gb:BX898151
DB_XREF= gi:40486811
DB_XREF=BX898151
CLONE=p754e07p5
TID=Os.47368.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to chromosome condensation-related SMC-associated protein 1 (OJ1477_F01.24), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4654010/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46500Os.11488.1.S1_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46500Os.44618.1.S1_s_at11/117+27773143..27776265Tankyrase 2, putative, expressed
LOC_Os07g46510Os.34873.1.S1_at11/117+27779362..27780298expressed protein
LOC_Os07g46520OsAffx.28932.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46520Os.45924.1.S1_x_at11/117+27781970..27785226HAD-superfamily hydrolase, subfamily IA, variant 1 containing protein, expressed
LOC_Os07g46530OsAffx.16734.1.S1_at11/117+27788969..27789283hypothetical protein
LOC_Os07g46540Os.9234.1.S1_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46540Os.47368.1.S1_x_at10/117+27789427..27797803HEAT repeat family protein, expressed
LOC_Os07g46550OsAffx.16735.1.S1_at11/117+27798862..27800717Annexin family protein
LOC_Os07g46560Os.31545.1.S1_at11/117+27806098..27809817Ubiquitin ligase SINAT5, putative, expressed
LOC_Os07g46570Os.37097.1.S1_at11/117+27812440..27813522Glutaredoxin family protein, expressed
LOC_Os07g46580OsAffx.22532.2.S1_x_at11/117+27818221..27822069ATP-dependent RNA helicase DDX47, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030261biological_processchromosome condensation
GO:0000796cellular_componentcondensin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47368.1.S1_x_at--552--1351Chr07:27790740..27790764 (25 bp)
AGAGCAAGAGGCCACGACCAGGAAT
LOC_Os07g46540
Os.47368.1.S1_x_at--190--10831Chr07:27790693..27790717 (25 bp)
TTGGTTCACTTGACAAACTCATGGT
LOC_Os07g46540
Os.47368.1.S1_x_at--472--5451Chr07:27790368..27790392 (25 bp)
GAACATGCCAGAATGCAGTGACAAT
LOC_Os07g46540
Os.47368.1.S1_x_at--381--3571Chr07:27790325..27790349 (25 bp)
CATACATCATCCACGTTTACAGAAT
LOC_Os07g46540
Os.47368.1.S1_x_at--520--5651Chr07:27790292..27790316 (25 bp)
GACAGCACAGAGGTTCAATCAGCGA
LOC_Os07g46540
Os.47368.1.S1_x_at--187--3071Chr07:27790276..27790300 (25 bp)
AATCAGCGAGAACTTCTTGCAAAGG
LOC_Os07g46540
Os.47368.1.S1_x_at--1114--1891Chr07:27789927..27790133 (25 bp)
ACGTGTGTCTCGCAGAAGACCAGTT
LOC_Os07g46540
Os.47368.1.S1_x_at--146--2771Chr07:27789912..27789935 (24 bp)
AAGACCAGTTAGGTGATGCCGAACT
LOC_Os07g46540
Os.47368.1.S1_x_at--330--8991Chr07:27789823..27789847 (25 bp)
TGAAGCAACTGGTCTCCCTGGCGCT
LOC_Os07g46540
Os.47368.1.S1_x_at--14--10831Chr07:27789799..27789823 (25 bp)
TTGTCCCACCAGAAACTCTATCTAA
LOC_Os07g46540
Os.47368.1.S1_x_at--75--731NONE
ATGTTTATAAGCCTGCGTTGAACTG
NONE
Target Sequence 
AGAGCAAGAGGCCACGACCAGGAATGCCGAGGCACACAAACAAAGAATTGGTTCACTTGACAAACTCATGGTAACTAAGA
GAACTGGGAAGGATAAGGGAAAATCTGCTGAAGNNNCAGAGGAAACTAGTGAGGTAGTTGATCCATCAACGGAGAGCAAT
TCTGAAGATAAGGAGAACATGCCAGAATGCAGTGACAATATTTGTTCGGAAAAGAGTCATACATCATCCACGTTTACAGA
ATCNGACGGTGACAGCACAGAGGTTCAATCAGCGAGAACTTCTTGCAAAGGNGTNNNNNGNNNNANNNNNNNTNANNNGA
GAGNNNNGGNNNNNNNANNNNNNNGNNNNCCAANNAGACGTGTGTCTCGCAGAAGACCAGTTAGGTGATGCCGAACTGNN
ATATGGACCAAGTGGNTAACANNTCCTCTCTGGGAAGANCTCGCCTAGAGANCTTGGNAGNTNTGAAGCAACTGGTCTCC
CTGGCGCTTGTCCCACCAGAAACTCTATCTAACGCCGATATATTTGTTGAATCATAATGTTTATAAGCCTGCGTTGAACT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47368.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis