Browse Element(s) Details


Os.47369.1.A1_at

Description gb:NM_197594.1
DB_XREF= gi:37536547
TID=Os.47369.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0015I11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015I11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3966010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39690Os.46189.1.S1_at11/1110+20878687..20879826expressed protein
LOC_Os10g39690OsAffx.19145.1.S1_x_at1/1110+20878687..20879826expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47369.1.A1_at--432--1672Chr10:20861002..20861026 (25 bp)
AGCCCCATGTGGCTGGTGACCGACC
LOC_Os10g39660
Os.47369.1.A1_at--118--792Chr10:20861008..20861032 (25 bp)
ATGTGGCTGGTGACCGACCTCCTCC
LOC_Os10g39660
Os.47369.1.A1_at--372--9491Chr10:20861048..20861072 (25 bp)
TCTCCTTCGAGGACTACTGCAACGA
LOC_Os10g39660
Os.47369.1.A1_at--264--991Chr10:20861153..20861177 (25 bp)
AGGAGGTGTACCGCGCGCTCGTCAA
LOC_Os10g39660
Os.47369.1.A1_at--130--3051Chr10:20861227..20861251 (25 bp)
AATCCCCACACATTTCTCTTCGATT
LOC_Os10g39660
Os.47369.1.A1_at--1120--2171Chr10:20861234..20861258 (25 bp)
ACACATTTCTCTTCGATTCGATCCC
LOC_Os10g39660
Os.47369.1.A1_at--1113--91Chr10:20861249..20861273 (25 bp)
ATTCGATCCCCTGTGTTCATCTTCT
LOC_Os10g39660
Os.47369.1.A1_at--123--10571Chr10:20861270..20861294 (25 bp)
TTCTTCAGAGAGATCAACTGATTTT
LOC_Os10g39660
Os.47369.1.A1_at--806--3291Chr10:20861300..20861324 (25 bp)
CAAAGGCTGTGAGATTAGTTGCCAA
LOC_Os10g39660
Os.47369.1.A1_at--411--7371Chr10:20861308..20861332 (25 bp)
GTGAGATTAGTTGCCAAAAGATTTC
LOC_Os10g39660
Os.47369.1.A1_at--294--10391NONE
TTTTGTTTCGTTTGGCGTGTGAACA
NONE
Target Sequence 
AGCCCCATGTGGCTGGTGACCGACCTCCTCCGGCGGCGGCGGACCGTCTCCTTCGAGGACTACTGCAACGAGGAGGAGGA
GGAGAGGAAGGCGGCCATGGCGAGGGTGCGTGGCCTCGAGGAGTGCGTCGCCGCCGCCGAGAGCGGCTGCGAGGAGGTGT
ACCGCGCGCTCGTCAATGCCNGGGTGTCGCTGCTCAACCTGCTCACGCCCACATTTTGACTCCACAATCCCCACACATTT
CTCTTCGATTCGATCCCCTGTGTTCATCTTCTTCTTCAGAGAGATCAACTGATTTTTTGAGCAAAGGCTGTGAGATTAGT
TGCCAAAAGATTTCATTTTGTTTCGTTTGGCGTGTGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47369.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis