Browse Element(s) Details


Os.47374.1.S1_at

Description gb:AK121864.1
DB_XREF= gi:37991487
TID=Os.47374.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.47374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033103C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103C22, full insert sequence.
FL= gb:AK121864.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5896011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58910Os.15783.1.S2_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58910Os.15783.1.S1_at11/114+34820857..34824722Protein kinase domain containing protein, expressed
LOC_Os04g58920Os.55614.1.S1_at11/114+34835503..34837093U-box domain containing protein, expressed
LOC_Os04g58929NANA4+34840636..34841335NA
LOC_Os04g58940OsAffx.26660.1.S1_at11/114+34844939..34845480expressed protein
LOC_Os04g58960Os.47374.1.S1_at11/114+34848235..34855464zinc finger protein, putative, expressed
LOC_Os04g58970Os.46109.1.S1_at9/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58970Os.9147.1.S1_s_at1/114+34865251..34867191Uncharacterized ACR, YggU family COG1872 containing protein, expressed
LOC_Os04g58980Os.56777.1.S1_at11/114+34867711..34870227IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os04g58990Os.52632.1.S1_at10/114+34870390..34872153Protein kinase domain containing protein, expressed
LOC_Os04g59000Os.17144.1.A1_at9/114+34872938..34879210protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0003682molecular_functionchromatin binding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47374.1.S1_at--160--331Chr04:34848815..34848839 (25 bp)
ATACTTAACACTAGTTTCTCTTCGT
LOC_Os04g58960
Os.47374.1.S1_at--908--6831Chr04:34848802..34848826 (25 bp)
GTTTCTCTTCGTGATGGAACCAAGG
LOC_Os04g58960
Os.47374.1.S1_at--744--2431Chr04:34848654..34848796 (25 bp)
AAAAGAGTGCGGTTCAGCCGGAGAA
LOC_Os04g58960
Os.47374.1.S1_at--32--1551Chr04:34848620..34848644 (25 bp)
AGCATCAGGCGGAATCATGGTGGAA
LOC_Os04g58960
Os.47374.1.S1_at--576--9551Chr04:34848540..34848564 (25 bp)
TCTTCAGTGATGACAGCGTAGTGTG
LOC_Os04g58960
Os.47374.1.S1_at--1158--1091Chr04:34848521..34848545 (25 bp)
AGTGTGATAATACCAGCTAGAAGCT
LOC_Os04g58960
Os.47374.1.S1_at--1148--10351Chr04:34848459..34848483 (25 bp)
TTTTTCCCTCGCCTAAATGTATTTG
LOC_Os04g58960
Os.47374.1.S1_at--966--2031Chr04:34848417..34848441 (25 bp)
ACTATCTTCTCCTGTACTATTGTTG
LOC_Os04g58960
Os.47374.1.S1_at--428--9871Chr04:34848347..34848371 (25 bp)
TACAGTGCAGTGAGGTTGCTCTGTT
LOC_Os04g58960
Os.47374.1.S1_at--658--911Chr04:34848310..34848334 (25 bp)
AGGCTGTGTATGTCTGTATGTATAT
LOC_Os04g58960
Os.47374.1.S1_at--1060--1091Chr04:34848274..34848298 (25 bp)
AGTGGACGAGTCTTGAGCAAAAGCT
LOC_Os04g58960
Target Sequence 
ATACTTAACACTAGTTTCTCTTCGTGATGGAACCAAGGAGCTGAAAAGAGTGCGGTTCAGCCGGAGAAGATTTGGAGAGC
ATCAGGCGGAATCATGGTGGAATGACAACCGTGAAAAAGTGTACGACAAATACAACGTGCGGGGNACTGATCGGATTTCT
TCAGTGATGACAGCGTAGTGTGATAATACCAGCTAGAAGCTAAATTCTCAAACTGNTTCAGATCTCAGAAGAGATCTTTT
TTTCCCTCGCCTAAATGTATTTGATGATGCTCTCTTCCTGACTATCTTCTCCTGTACTATTGTTGTATAGAAGGNATCAG
AATTGATGATGTGTCGTATGANTAGGGTAATACAGTGCAGTGAGGTTGCTCTGTTGNCCATGATACNAGGCTGTGTATGT
CTGTATGTATATTCGTGGGAGTTAGTGGACGAGTCTTGAGCAAAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis