Browse Element(s) Details


Os.47379.1.S1_at

Description gb:CB673923
DB_XREF= gi:29677648
DB_XREF=OSJNEe08L06.r
CLONE=OSJNEe08L06
TID=Os.47379.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47379 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5171011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47379.1.S1_at--819--7591Chr05:29582343..29582367 (25 bp)
GGGCAATGTGTATACTATTATCTTA
LOC_Os05g51710
Os.47379.1.S1_at--937--2851Chr05:29581435..29581459 (25 bp)
AAGTCCACAAGAATCCACACTGCTG
LOC_Os05g51710
Os.47379.1.S1_at--251--5291Chr05:29581398..29581422 (25 bp)
GAAGTGGGACAGCTTCCGAACTTTG
LOC_Os05g51710
Os.47379.1.S1_at--770--2151Chr05:29581390..29581414 (25 bp)
ACAGCTTCCGAACTTTGTGCCAGAA
LOC_Os05g51710
Os.47379.1.S1_at--860--6851Chr05:29581322..29581346 (25 bp)
GTTTGAAGTTTGAATGCTCGAGCAT
LOC_Os05g51710
Os.47379.1.S1_at--760--3011Chr05:29581310..29581334 (25 bp)
AATGCTCGAGCATGTCTGAGATACA
LOC_Os05g51710
Os.47379.1.S1_at--130--2211Chr05:29581100..29581124 (25 bp)
ACAAGCAGGCAAGAAGTTGGGTCAT
LOC_Os05g51710
Os.47379.1.S1_at--977--7691Chr05:29581082..29581106 (25 bp)
GGGTCATGGTAATCAATCCTTGTTC
LOC_Os05g51710
Os.47379.1.S1_at--916--751Chr05:29580954..29580978 (25 bp)
ATGTCCATTTTTTAATCTTACGATA
LOC_Os05g51710
Os.47379.1.S1_at--631--10651Chr05:29580894..29580918 (25 bp)
TTCCCATAGAGAAGCGAATGCCTGT
LOC_Os05g51710
Os.47379.1.S1_at--63--5271Chr05:29580879..29580903 (25 bp)
GAATGCCTGTGCTGATAGCAACTAT
LOC_Os05g51710
Target Sequence 
GGGCAATGTGTATACTATTATCTTAAATCTACAGATCTAAGTCCACAAGAATCCACACTGCTGTGTGATATTGTGGAAGT
GGGACAGCTTCCGAACTTTGTGCCAGAAGATGAGAAAACAAGATACGCATTCTACATAATGACCNAGTCANGGTTTGAAG
TTTGAATGCTCGAGCATGTCTGAGATACAGGTGGATTCATGGGTGAGAGCGATAAGAGGAGATTGCGGATTGTCTGACGG
TGGTGAGAGTAGGAGCAAGACAAGCAGGCAAGAAGTTGGGTCATGGTAATCAATCCTTGTTCTTGAAGGGCGTACACATT
AAGATGTATTATGCAGTGATGTACAGTAGATAAGTCGAGAAAATATATAGTGAAAAACTTGGAAANTAGCATAAGATGTA
AAAAGATGTCCATTTTTTAATCTTACGATAGTTTTCAGGTTTTAAGTAGATAGGTGGTTTTTTTTTTCCCATAGAGAAGC
GAATGCCTGTGCTGATAGCAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis