Browse Element(s) Details


Os.47381.2.S1_at

Description gb:AK120916.1
DB_XREF= gi:37990539
TID=Os.47381.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034I15, full insert sequence.
FL= gb:AK120916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3680010/113-oxoacyl-synthase I, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g36740Os.54520.1.S1_at11/114+21972967..21975529Potassium channel SKOR, putative, expressed
LOC_Os04g36750Os.7537.1.S1_at11/114+21981924..2198286322.0 kDa class IV heat shock protein precursor, putative, expressed
LOC_Os04g36760Os.12611.1.S1_at11/114+21984051..21984890enzyme of the cupin superfamily, putative, expressed
LOC_Os04g36770Os.51562.1.S1_at11/114+21986143..21986834pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g36780Os.47427.1.S1_at11/114+21987709..21990406expressed protein
LOC_Os04g36790OsAffx.26356.1.S1_at11/114+21993735..219950416b-interacting protein 1, putative, expressed
LOC_Os04g36800Os.47381.1.S1_x_at11/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36800Os.47381.2.S1_at10/114+21997834..220022683-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os04g36810Os.6415.1.S1_at11/114+22004648..22008142U6 snRNA-associated Sm-like protein LSm1, putative, expressed
LOC_Os04g36820NANA4+22011012..22011497hypothetical protein
LOC_Os04g36830OsAffx.26357.1.S1_at11/114+22017500..22019654expressed protein
LOC_Os04g36840OsAffx.4007.1.S1_at11/114+22020147..22023130pentatricopeptide, putative, expressed
LOC_Os04g36850OsAffx.26358.1.S1_at10/114+22024778..22027275expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009536cellular_componentplastid
GO:0004312molecular_functionfatty-acid synthase activity
GO:0004315molecular_function3-oxoacyl-[acyl-carrier protein] synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47381.2.S1_at--1037--1391Chr04:21997900..21997924 (25 bp)
AGACATCAGTGATCCAGCTTTGTCA
LOC_Os04g36800
Os.47381.2.S1_at--441--411Chr04:21997896..21997920 (25 bp)
ATCAGTGATCCAGCTTTGTCATGTG
LOC_Os04g36800
Os.47381.2.S1_at--931--1111Chr04:21997893..21997917 (25 bp)
AGTGATCCAGCTTTGTCATGTGTAA
LOC_Os04g36800
Os.47381.2.S1_at--208--6371Chr04:21997890..21997914 (25 bp)
GATCCAGCTTTGTCATGTGTAATTT
LOC_Os04g36800
Os.47381.2.S1_at--648--3391Chr04:21997886..21997910 (25 bp)
CAGCTTTGTCATGTGTAATTTGTTC
LOC_Os04g36800
Os.47381.2.S1_at--362--3511Chr04:21997877..21997901 (25 bp)
CATGTGTAATTTGTTCGTTGCGTGC
LOC_Os04g36800
Os.47381.2.S1_at--81--10791Chr04:21997867..21997891 (25 bp)
TTGTTCGTTGCGTGCTTTAGCTTCA
LOC_Os04g36800
Os.47381.2.S1_at--764--6711Chr04:21997865..21997889 (25 bp)
GTTCGTTGCGTGCTTTAGCTTCAAT
LOC_Os04g36800
Os.47381.2.S1_at--119--4031Chr04:21997862..21997886 (25 bp)
CGTTGCGTGCTTTAGCTTCAATCTT
LOC_Os04g36800
Os.47381.2.S1_at--687--7291Chr04:21997856..21997880 (25 bp)
GTGCTTTAGCTTCAATCTTCAAAGA
LOC_Os04g36800
Os.47381.2.S1_at--1134--1451Chr04:21997834..21997858 (25 bp)
AGAATAATAATTCATCGTGCAGTGC
NONE
Target Sequence 
AGACATCAGTGATCCAGCTTTGTCATGTGTAATTTGTTCGTTGCGTGCTTTAGCTTCAATCTTCAAAGAATAATAATTCA
TCGTGCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47381.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis