Browse Element(s) Details


Os.47447.1.S1_at

Description gb:AK066755.1
DB_XREF= gi:32976773
TID=Os.47447.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075C21, full insert sequence.
FL= gb:AK066755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0673011/11early nodule-specific-like protein ENOD8 gene, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06660Os.36001.1.S1_at11/116+3127080..3129960expressed protein
LOC_Os06g06670Os.32061.2.S1_x_at11/116+3130222..3133227expressed protein
LOC_Os06g06670Os.32061.1.S1_at10/116+3130222..3133227expressed protein
LOC_Os06g06680OsAffx.15289.1.S1_at11/116+3134632..3135975expressed protein
LOC_Os06g06690OsAffx.27477.1.S1_at8/116+3138201..3138653hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06700OsAffx.27477.3.S1_s_at11/116+3138824..3139219hypothetical protein
LOC_Os06g06710OsAffx.27478.1.S1_at11/116+3141027..3142989hypothetical protein
LOC_Os06g06710OsAffx.15289.1.S1_at1/116+3141027..3142989hypothetical protein
LOC_Os06g06720Os.4365.1.S1_at11/116+3144478..3146612oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g06730Os.47447.1.S1_at11/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06730OsAffx.10342.1.S1_x_at2/116+3153275..3157429early nodule-specific-like protein ENOD8 gene, putative, expressed
LOC_Os06g06740OsAffx.27479.1.S1_at11/116+3159101..3161401Myb-like DNA-binding domain containing protein
LOC_Os06g06750Os.4367.1.S1_at11/116+3161815..3168414Agamous-like MADS box protein AGL9 homolog, putative, expressed
LOC_Os06g06760Os.15454.1.S2_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.2.S1_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.15454.1.S1_x_at11/116+3174807..3180712U-box domain containing protein, expressed
LOC_Os06g06760Os.44751.1.S1_at10/116+3174807..3180712U-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47447.1.S1_at--1137--5851Chr06:3153535..3153559 (25 bp)
GAGCCCGAGACGAAGGTAGCACTGC
LOC_Os06g06730
Os.47447.1.S1_at--724--5311Chr06:3153524..3153548 (25 bp)
GAAGGTAGCACTGCATGCTCTGTTA
LOC_Os06g06730
Os.47447.1.S1_at--996--9051Chr06:3153513..3153537 (25 bp)
TGCATGCTCTGTTACCAACCTTAAA
LOC_Os06g06730
Os.47447.1.S1_at--104--5971Chr06:3153486..3153510 (25 bp)
GAGAAGAATGCACAGATGATCCTAA
LOC_Os06g06730
Os.47447.1.S1_at--713--6371Chr06:3153469..3153493 (25 bp)
GATCCTAAAACATTTTCGTAGCGGT
LOC_Os06g06730
Os.47447.1.S1_at--876--9391Chr06:3153454..3153478 (25 bp)
TCGTAGCGGTTTTTTAGCGGTTCAG
LOC_Os06g06730
Os.47447.1.S1_at--121--1631Chr06:3153439..3153463 (25 bp)
AGCGGTTCAGCCGTGTTGTGTCATC
LOC_Os06g06730
Os.47447.1.S1_at--1110--8811Chr06:3153426..3153450 (25 bp)
TGTTGTGTCATCTCTCGCGCAGTTG
LOC_Os06g06730
Os.47447.1.S1_at--349--9511Chr06:3153414..3153438 (25 bp)
TCTCGCGCAGTTGGCCATGTGATGA
LOC_Os06g06730
Os.47447.1.S1_at--41--5491Chr06:3153391..3153415 (25 bp)
GAACTTGGATCTTTTGATTGCGAAT
LOC_Os06g06730
Os.47447.1.S1_at--622--7411Chr06:3153343..3153367 (25 bp)
GTGTTCGTACAAGTACAATGCTCTT
LOC_Os06g06730
Target Sequence 
GAGCCCGAGACGAAGGTAGCACTGCATGCTCTGTTACCAACCTTAAACAGAGAAGAATGCACAGATGATCCTAAAACATT
TTCGTAGCGGTTTTTTAGCGGTTCAGCCGTGTTGTGTCATCTCTCGCGCAGTTGGCCATGTGATGAACTTGGATCTTTTG
ATTGCGAATTTGTGATTGCAACGAAGGTATATGTGTTCGTACAAGTACAATGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis