Browse Element(s) Details


Os.47541.1.S1_x_at

Description gb:BX901539
DB_XREF= gi:40491487
DB_XREF=BX901539
CLONE=p702h05p3
TID=Os.47541.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.47541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0031C24.49 (OSJNBa0031C24.49), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g119806/11hypothetical protein
LOC_Os01g363405/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein
LOC_Os07g11980OsAffx.16217.1.S1_x_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980OsAffx.16217.2.S1_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_at7/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_x_at6/117+6639949..6641380hypothetical protein
LOC_Os07g11990NANA7+6645541..6646932hypothetical protein
LOC_Os07g12000NANA7+6649279..6653037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47541.1.S1_x_at--367--10195Chr01:8554414..8554437 (24 bp)
TATAGTTCCCACACGCACGGTGCCG
NONE
Os.47541.1.S1_x_at--1150--2095Chr01:8554439..8554463 (25 bp)
ACATCGCCAGCTTTCAGCCATCGTT
NONE
Os.47541.1.S1_x_at--800--10515Chr01:8554451..8554475 (25 bp)
TTCAGCCATCGTTGCACGCGCATCG
NONE
Os.47541.1.S1_x_at--232--5155Chr01:8554820..8554844 (25 bp)
GCAAAATGCGAATAGCTGCTGCTGC
NONE
Os.47541.1.S1_x_at--350--10013Chr01:8554832..8554856 (25 bp)
TAGCTGCTGCTGCTAGTGTTTCTTC
NONE
Os.47541.1.S1_x_at--8--3693Chr01:8554844..8554868 (25 bp)
CTAGTGTTTCTTCATTAATTTGTTT
NONE
Os.47541.1.S1_x_at--601--4315Chr01:8554888..8554912 (25 bp)
CCTTGAACTGTTATGGGCTTGTGCC
NONE
Os.47541.1.S1_x_at--833--4934Chr01:8554904..8554928 (25 bp)
GCTTGTGCCATTATGCTCATGATGT
NONE
Os.47541.1.S1_x_at--948--7275Chr01:8554908..8554932 (25 bp)
GTGCCATTATGCTCATGATGTAAAA
NONE
Os.47541.1.S1_x_at--959--10195Chr01:8554938..8554962 (25 bp)
TATATTTGTGTACTGCTGATGGTGT
NONE
Os.47541.1.S1_x_at--257--4755Chr01:8554952..8554976 (25 bp)
GCTGATGGTGTATGAATGCTTTTAG
NONE
Target Sequence 
TATAGTTCCCACACGCACGGTGCCGCACATCGCCAGCTTTCAGCCATCGTTGCACGCGCATCGCCGCCCTTCTCCCACAT
CCCGGCGGTGGCAGCGGCTCTGCATCCCGCCGCGGTCTCGGCTCTGCTTGCGGTCNGCGGNGGCGGCTGNGTCCNNATCC
CATCGGTGGCGNGGCGGNGTCNGCATCTGGTGGNCGNCGNCGGCTTTGNATCCTGCCGCGGCGACGAGTCCGCATCCCGC
CGCGGCCTCGACTCTGCTTGCGGTNATGGCGACGCCGTCTCCTCCCTGCCTCCTCCGCGCCCTCCCTCTTGTCACCTCAC
CCTCTTCTCGGGGGCTCCGACGCCGGCCTATTACCTCCTTGCTCCNCTGCTCCTCGCCGTCGGTAANGATACNCCCTTGC
GTTGATTAGCAAAATGCGAATAGCTGCTGCTGCTAGTGTTTCTTCATTAATTTGTTTGACTTTATNGCAGGNGGATGCCT
TGAACTGTTATGGGCTTGTGCCATTATGCTCATGATGTAAAAAGTAATATATTTGTGTACTGCTGATGGTGTATGAATGC
TTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47541.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis