Browse Element(s) Details


OsAffx.16217.1.S1_x_at

Description gb:NM_186594.1
DB_XREF= gi:34900273
TID=OsAffx.16217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0031C24.48 (OSJNBa0031C24.48), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1198011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein
LOC_Os07g11980OsAffx.16217.1.S1_x_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980OsAffx.16217.2.S1_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_at7/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_x_at6/117+6639949..6641380hypothetical protein
LOC_Os07g11990NANA7+6645541..6646932hypothetical protein
LOC_Os07g12000NANA7+6649279..6653037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16217.1.S1_x_at--75--4653Chr07:6640247..6640271 (25 bp)
GCGTACCAGACGAAAGGCGGCGGCA
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--842--5053Chr07:6640225..6640249 (25 bp)
GCAGCTGCTGGATCGCCGAAGAGAC
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--870--1873Chr07:6640160..6640226 (25 bp)
ACGAGGGCGGCGCTCCGTGGCGACG
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--396--7553Chr07:6640144..6640168 (25 bp)
GTGGCGACGCTGGTCCGGCGAGGGC
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--226--6231Chr07:6640113..6640137 (25 bp)
GATGGCGCCGCGATTTCCCTCACTG
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--363--6531Chr07:6640102..6640126 (25 bp)
GATTTCCCTCACTGGCTCGACAAGA
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--563--10651Chr07:6640099..6640123 (25 bp)
TTCCCTCACTGGCTCGACAAGAAAG
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--881--3331Chr07:6640093..6640117 (25 bp)
CACTGGCTCGACAAGAAAGCGGCGA
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--961--4794Chr01:17792220..17792243 (24 bp)
GCTCGACAAGAAAGCGGCGACGCTG
NONE
OsAffx.16217.1.S1_x_at--631--2751Chr07:6640081..6640105 (25 bp)
AAGAAAGCGGCGACGCTGGCCACAG
LOC_Os07g11980
OsAffx.16217.1.S1_x_at--878--3311Chr07:6640061..6640085 (25 bp)
CACAGGCTCCGCAAGATGGCGGTGT
LOC_Os07g11980
Target Sequence 
GCGTACCAGACGAAAGGCGGCGGCAGCTGCTGGATCGCCGAAGAGACGAGGGCGGCGCTCCGTGGCGACGCTGGTCCGGC
GAGGGCGGCGAAGATGGCGCCGCGATTTCCCTCACTGGCTCGACAAGAAAGCGGCGACGCTGGCCACAGGCTCCGCAAGA
TGGCGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis