Browse Element(s) Details


OsAffx.16217.2.S1_at

Description tigr:9635.m01173
TID=OsAffx.16217.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1198011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11930OsAffx.22449.1.S1_at11/117+6615897..6616649hypothetical protein
LOC_Os07g11930OsAffx.13248.1.S1_at1/117+6615897..6616649hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_x_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940OsAffx.20967.1.S1_at10/117+6617384..6617912hypothetical protein
LOC_Os07g11940Os.15353.1.S1_at4/117+6617384..6617912hypothetical protein
LOC_Os07g11950Os.4414.1.S1_x_at7/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11950Os.8502.5.S1_x_at5/117+6618719..6619174Prolamin PPROL 4A precursor, putative, expressed
LOC_Os07g11959NANA7+6623394..6623906NA
LOC_Os07g11970Os.30746.1.S1_at6/117+6630871..6633707Cytochrome P450 family protein
LOC_Os07g11980OsAffx.16217.1.S1_x_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980OsAffx.16217.2.S1_at11/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_at7/117+6639949..6641380hypothetical protein
LOC_Os07g11980Os.47541.1.S1_x_at6/117+6639949..6641380hypothetical protein
LOC_Os07g11990NANA7+6645541..6646932hypothetical protein
LOC_Os07g12000NANA7+6649279..6653037retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16217.2.S1_at--165--4015Chr01:8555243..8555263 (21 bp)
CGTCGCTGCCAAACATGTTCTTAGT
NONE
OsAffx.16217.2.S1_at--403--2115Chr01:8555251..8555275 (25 bp)
ACATGTTCTTAGTTTTCAGCTCCTC
NONE
OsAffx.16217.2.S1_at--1020--8795Chr01:8555254..8555278 (25 bp)
TGTTCTTAGTTTTCAGCTCCTCCAA
NONE
OsAffx.16217.2.S1_at--214--3395Chr01:8555267..8555291 (25 bp)
CAGCTCCTCCAACCTCAAGGGTATT
NONE
OsAffx.16217.2.S1_at--881--3215Chr01:8555282..8555306 (25 bp)
CAAGGGTATTATAGACATTTTCAAC
NONE
OsAffx.16217.2.S1_at--592--10215Chr01:8555300..8555324 (25 bp)
TTTCAACCAAACTAACCAGGGAATG
NONE
OsAffx.16217.2.S1_at--724--7613Chr01:8555318..8555342 (25 bp)
GGGAATGCTGCTAAATCTAACGGTA
NONE
OsAffx.16217.2.S1_at--448--8211Chr07:6640296..6640673 (25 bp)
GGAATCGACAGTAACCTGCATGCAT
LOC_Os07g11980
OsAffx.16217.2.S1_at--185--2133Chr07:6640289..6640312 (24 bp)
ACAGTAACCTGCATGCATTCCCTGT
LOC_Os07g11980
OsAffx.16217.2.S1_at--170--4593Chr07:6640180..6640204 (25 bp)
GCGCTTGCCCGATGGCAGATGCCGC
LOC_Os07g11980
OsAffx.16217.2.S1_at--1138--10394Chr01:17792314..17792338 (25 bp)
TTTTGGGACGATGGGTGCGCTGATT
NONE
Target Sequence 
CGTCGCTGCCAAACATGTTCTTAGTTTTCAGCTCCTCCAACCTCAAGGGTATTATAGACATTTTCAACCAAACTAACCAG
GGAATGCTGCTAAATCTAACGGTAGGGGTATGTAGGGGATCCAATCAAAAATTCAAGGGTATAGAAGGAATCGACAGTAA
CCTGCATGCATTCCCTGTCCGTGAGGAGGAGGAGTGCGTACCAGACGAAAGGCGGCGGCAGCTGCTGGATCGCCGAAGAG
ACGAGGGCGGCGGTCGGCTGCGGCGCTTGCCCGATGGCAGATGCCGCCGGCTAGCTCCGTGGCGACGCTGGTCCGGCGAG
GGCGGCGAAGATGGCGCCGCGATTTCCCTCACTGGCTCGACAAGAAAGCGGCGACGCTGGCCACAGGCTCCGCAAGATGG
CGGTGTCGGCGCCGACGAACCTCACGAGGAGGCGATGAAGATTTGGGGATTTTGGGACGATGGGTGCGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16217.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis