Browse Element(s) Details


Os.47598.1.S1_at

Description gb:BX900870
DB_XREF= gi:40493646
DB_XREF=BX900870
CLONE=y795e07p3
TID=Os.47598.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1219011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47598.1.S1_at--1098--2011Chr01:6646752..6646776 (25 bp)
ACTACGAGAGGATGCCCGAGTGGCA
LOC_Os01g12190
Os.47598.1.S1_at--1010--8411Chr01:6646901..6646925 (25 bp)
GGCCGATCGACAGCTACCTGATAGA
LOC_Os01g12190
Os.47598.1.S1_at--686--2191Chr01:6646953..6646977 (25 bp)
ACACACTGATCGATCTTGCAGGCTA
LOC_Os01g12190
Os.47598.1.S1_at--320--1191Chr01:6647031..6647055 (25 bp)
AGTATGATCTACTGCTAGCTTAGCT
LOC_Os01g12190
Os.47598.1.S1_at--372--4851Chr01:6647053..6647077 (25 bp)
GCTAGTTTTTTGTACGTCTTCTTTG
LOC_Os01g12190
Os.47598.1.S1_at--38--4031Chr01:6647067..6647091 (25 bp)
CGTCTTCTTTGCGAGTTCTGAGTAT
LOC_Os01g12190
Os.47598.1.S1_at--607--1111Chr01:6647112..6647136 (25 bp)
AGTGTTGTGATCGAGTTGTGACCAT
LOC_Os01g12190
Os.47598.1.S1_at--231--7931Chr01:6647141..6647165 (25 bp)
GGATTGACTAGCTAGCAGCGCTTAA
LOC_Os01g12190
Os.47598.1.S1_at--240--5051Chr01:6647155..6647179 (25 bp)
GCAGCGCTTAATTCCGTTGTTTGTA
LOC_Os01g12190
Os.47598.1.S1_at--420--311Chr01:6647182..6647206 (25 bp)
ATACCTATACAGTACGCTACTCTCG
LOC_Os01g12190
Os.47598.1.S1_at--547--7151Chr01:6647218..6647242 (25 bp)
GTCTTTTCATACTACATCCTACATC
LOC_Os01g12190
Target Sequence 
ACTACGAGAGGATGCCCGAGTGGCAGCTCGACCNCCTNNTCTCNGAGTACGNNCTCCCNGTCGATGNCANCCTCCAGCAC
AAGCGCGCNTTCGCNATCGGCGCCTTCCTCTGGGGCGCCGGCGNCGGAGCCAACGCCGCCTGATCCATCGGCCGATCGAC
AGCTACCTGATAGATGAATCGACAGTCGATGATCGATCGACACACACTGATCGATCTTGCAGGCTAGTATTATGCTTTGA
TATATGGATACAAGTGTTTTGTAATTAAGGAGGCATAGGAGTATGATCTACTGCTAGCTTAGCTAGTTTTTTGTACGTCT
TCTTTGCGAGTTCTGAGTATTTTGGACTTTGGAGTAGGCTAGTGTTGTGATCGAGTTGTGACCATGTGAGGATTGACTAG
CTAGCAGCGCTTAATTCCGTTGTTTGTATCATACCTATACAGTACGCTACTCTCGTATAATAATGTGTCTTTTCATACTA
CATCCTACATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis