Browse Element(s) Details


Os.47694.1.S1_at

Description gb:BM420733
DB_XREF= gi:18387535
DB_XREF=U018A02
CLONE=U018A02
TID=Os.47694.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47694 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T45850 (A.thaliana) T45850 hypothetical protein F3A4.50 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g108809/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10840OsAffx.22433.5.S1_s_at11/113+5546863..5549667hypothetical protein
LOC_Os03g10840OsAffx.22433.5.S1_at5/113+5546863..5549667hypothetical protein
LOC_Os03g10850Os.14106.1.S1_at10/113+5552488..5555549expressed protein
LOC_Os03g10850OsAffx.12815.1.S1_at2/113+5552488..5555549expressed protein
LOC_Os03g10860Os.4660.1.S1_s_at11/113+5561171..5561827expressed protein
LOC_Os03g10870Os.50795.1.S1_at11/113+5565117..5567974integral membrane protein, putative, expressed
LOC_Os03g10880Os.47694.1.S1_at9/113+5568679..5571620transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g10890Os.19285.1.S1_at11/113+5573121..5575109Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g10900OsAffx.12816.1.S1_at11/113+5575945..5578899NB-ARC domain containing protein, expressed
LOC_Os03g10910OsAffx.12817.1.S1_at11/113+5586147..5588873NB-ARC domain containing protein, expressed
LOC_Os03g10920Os.53184.1.S1_at11/113+5588942..5591848expressed protein
LOC_Os03g10930Os.13629.1.S1_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10930OsAffx.12818.1.S1_s_at11/113+5592502..5594589mitochondrial ribosomal protein L51/S25/CI-B8 family protein, putative, expressed
LOC_Os03g10940Os.5990.1.S1_at11/113+5595179..5599842Casein kinase II, alpha chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47694.1.S1_at--1135--6671Chr03:5569239..5569263 (25 bp)
GTTCTCCGCAGGAGGAGTCCCGCCG
LOC_Os03g10880
Os.47694.1.S1_at--587--5071Chr03:5569165..5569189 (25 bp)
GCAGCGGCGGATTCATGAACAGCAT
LOC_Os03g10880
Os.47694.1.S1_at--53--2451Chr03:5569136..5569160 (25 bp)
AAGAAGCTCGGGAGGCTCAACCCGT
LOC_Os03g10880
Os.47694.1.S1_at--556--9711Chr03:5569120..5569144 (25 bp)
TCAACCCGTTCTTGCGATCGGACGT
LOC_Os03g10880
Os.47694.1.S1_at--1093--10551Chr03:5569112..5569136 (25 bp)
TTCTTGCGATCGGACGTGCTCGGCG
LOC_Os03g10880
Os.47694.1.S1_at--1156--2851Chr03:5569061..5569085 (25 bp)
AAGGATCGGAGGCACTCCATTTCTT
LOC_Os03g10880
Os.47694.1.S1_at--398--6191Chr03:5569053..5569077 (25 bp)
GAGGCACTCCATTTCTTGACCAACC
LOC_Os03g10880
Os.47694.1.S1_at--320--7771Chr03:5568987..5569011 (25 bp)
GGTGCTTTTGATTTTTCATGATCGC
LOC_Os03g10880
Os.47694.1.S1_at--527--831Chr03:5568929..5568953 (25 bp)
ATGGAGGTAGTACTATTTCAGGTGT
LOC_Os03g10880
Os.47694.1.S1_at--502--7391NONE
GTGAGATTTGCTCCCATCTATCTCG
NONE
Os.47694.1.S1_at--624--4331NONE
CCATCTATCTCGATGTACCAGTACC
NONE
Target Sequence 
GTTCTCCGCAGGAGGAGTCCCGCCGTCCGGTAGGCCGCCGCTGCCGAAGAAGCCGGNCGGCGGCGGCGGCGGAAGCAGCG
GCGGATTCATGAACAGCATGTCCNAAGAAGCTCGGGAGGCTCAACCCGTTCTTGCGATCGGACGTGCTCGGCGGCGGCNA
GGGTGCGGACGAANCCGCCCAAGGATCGGAGGCACTCCATTTCTTGACCAACCAGACCTTGATCAAAGTGATCATGCATG
ACTGGTGTCTTCATGGTGCTTTTGATTTTTCATGATCGCTATGTAGCAATGAACATAAATAAGCATGATAGTATGGAGGT
AGTACTATTTCAGGTGTGTAGTATTTTAGTATGTAACCTTGTAAATGTATCATTTGTGTTACAACTTACAACACAAATTT
TGAACTCANTTTCAATGTAAGGTTTTGGTATANGTCCTAGTANNNAANCTGGNTGTAGTNCTACNGNATGAGTAATTGAT
TTGATCGAAGTCNTTCCTCAGTGTAAAGTATATGTCACCTGAAGTATAANCCGTGAGATTTGCTCCCATCTATCTCGATG
TACCAGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis