Browse Element(s) Details


Os.47712.1.S1_at

Description gb:AK061434.1
DB_XREF= gi:32971452
TID=Os.47712.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A08, full insert sequence.
FL= gb:AK061434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2809010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28060NANA5+16320252..16320609hypothetical protein
LOC_Os05g28070NANA5+16331681..16334680retrotransposon protein, putative, unclassified
LOC_Os05g28080NANA5+16337505..16339218retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g28090Os.38760.1.S1_s_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.38760.1.S1_at11/115+16343312..16345070expressed protein
LOC_Os05g28090Os.47712.1.S1_at10/115+16343312..16345070expressed protein
LOC_Os05g28100OsAffx.27865.1.S1_x_at1/115+16348734..16350647transposon protein, putative, Pong sub-class, expressed
LOC_Os05g28110Os.46500.2.S1_at2/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28110Os.46500.1.S1_at1/115+16350767..16360901transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g28120Os.50584.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.14919.1.S1_at4/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120Os.56216.1.S1_at2/115+16365395..16375688transposon protein, putative, Mutator sub-class
LOC_Os05g28120OsAffx.29313.1.S1_at1/115+16365395..16375688transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47712.1.S1_at--1127--4311Chr05:16344437..16344461 (25 bp)
CCATTCTTGGTTTCTTGCGAGGCTA
LOC_Os05g28090
Os.47712.1.S1_at--115--9591Chr05:16344433..16344457 (25 bp)
TCTTGGTTTCTTGCGAGGCTAATTC
LOC_Os05g28090
Os.47712.1.S1_at--592--7871Chr05:16344429..16344453 (25 bp)
GGTTTCTTGCGAGGCTAATTCAGAG
LOC_Os05g28090
Os.47712.1.S1_at--877--8291Chr05:16344417..16344441 (25 bp)
GGCTAATTCAGAGATCGGGTGTACA
LOC_Os05g28090
Os.47712.1.S1_at--997--9591Chr05:16344410..16344434 (25 bp)
TCAGAGATCGGGTGTACAGGTTTGT
LOC_Os05g28090
Os.47712.1.S1_at--1037--7391Chr05:16344399..16344423 (25 bp)
GTGTACAGGTTTGTGATGGTTTTTT
LOC_Os05g28090
Os.47712.1.S1_at--775--10291Chr05:16344375..16344399 (25 bp)
TTTCCTTTGTTTCTGCAGCCGATTA
LOC_Os05g28090
Os.47712.1.S1_at--546--10251Chr05:16344370..16344394 (25 bp)
TTTGTTTCTGCAGCCGATTATCATG
LOC_Os05g28090
Os.47712.1.S1_at--229--10551NONE
TTCTTCCCCGGGATGATGTTGTGGG
NONE
Os.47712.1.S1_at--22--7292Chr09:14590699..14590723 (25 bp)
GTGCCACAATCTTCTTGGATGTATC
NONE
Os.47712.1.S1_at--1093--3292Chr09:14590696..14590719 (24 bp)
CACAATCTTCTTGGATGTATCGAGA
NONE
Target Sequence 
CCATTCTTGGTTTCTTGCGAGGCTAATTCAGAGATCGGGTGTACAGGTTTGTGATGGTTTTTTTTCCTTTGTTTCTGCAG
CCGATTATCATGAACTGGATGAGGCTGAGGTGGTTCAAGCGCAAGTTCGTCGAGACGTACCTGCAGTTCATGTTCACCTA
CCTCTTCTTCCCCGGGATGATGTTGTGGGCACCATTCGTCAACTTCAGGAAGTTCCCAAGGGATCCAACCATGAAGTACC
CTTGGTCCAAGCCAAAGGAAGGCACACCGTTGTTCAAGGACAGATACCCACCTATAGAAACCTACAAGTGATCAGAAGTA
CTAGACCGTATTCTTTTCGAAAAAAATAGCATTTCTTTGCATGGATTTGTAAAACATGCATGGTGCCACAATCTTCTTGG
ATGTATCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis