Browse Element(s) Details


Os.47737.1.S1_at

Description gb:AK060534.1
DB_XREF= gi:32970552
TID=Os.47737.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-008-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A12, full insert sequence.
FL= gb:AK104296.1 gb:AK060534.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4845011/11Caricain precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48410Os.28943.1.S1_x_at3/112+29639398..29642638retrotransposon protein, putative, unclassified
LOC_Os02g48420NANA2+29643259..29648155retrotransposon protein, putative, unclassified
LOC_Os02g48430OsAffx.12549.1.S1_at11/112+29651473..29654045expressed protein
LOC_Os02g48430Os.6760.2.S1_at1/112+29651473..29654045expressed protein
LOC_Os02g48440OsAffx.14106.1.S1_at11/112+29658295..29658594hypothetical protein
LOC_Os02g48450Os.47737.1.S1_at11/112+29661874..29663793Caricain precursor, putative, expressed
LOC_Os02g48460Os.7122.1.S1_at11/112+29664832..29669151NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g48470Os.12751.1.S1_at11/112+29670153..29671174expressed protein
LOC_Os02g48480Os.38507.1.S1_at9/112+29671967..29672681expressed protein
LOC_Os02g48490OsAffx.24783.1.S1_at11/112+29679419..29680342hypothetical protein
LOC_Os02g48500OsAffx.12550.1.S1_at11/112+29684238..29684717hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009414biological_processresponse to water deprivation
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47737.1.S1_at--644--8191Chr02:29662903..29662927 (25 bp)
GGAAGACTACCCATACCTCATGGAA
LOC_Os02g48450
Os.47737.1.S1_at--655--9191Chr02:29663079..29663103 (25 bp)
TCCAAAGTCATCACCATAACCGGCT
LOC_Os02g48450
Os.47737.1.S1_at--857--7632Chr08:14031622..14031646 (25 bp)
GGGAGCAGAGACTTTCAGTTCTACA
NONE
Os.47737.1.S1_at--230--5291Chr02:29663338..29663362 (25 bp)
GAATGTGGCATTCAACCGGATCATG
LOC_Os02g48450
Os.47737.1.S1_at--938--9911Chr02:29663392..29663416 (25 bp)
TACGGCCAGGACTACATCATCATGA
LOC_Os02g48450
Os.47737.1.S1_at--498--9831Chr02:29663503..29663527 (25 bp)
TACAAGATTGCTTCTTACCCAACCA
LOC_Os02g48450
Os.47737.1.S1_at--1065--4851Chr02:29663553..29663577 (25 bp)
GCTAGTTTTGTAGGCGATCTTGTAA
LOC_Os02g48450
Os.47737.1.S1_at--390--6431Chr02:29663568..29663592 (25 bp)
GATCTTGTAATCCATTTGTCTCTGA
LOC_Os02g48450
Os.47737.1.S1_at--1077--2211Chr02:29663597..29663621 (25 bp)
AAAGAACCGGCCTAAGCAACGCTGT
LOC_Os02g48450
Os.47737.1.S1_at--156--2611Chr02:29663614..29663638 (25 bp)
AACGCTGTGCAATTCCTGGATGCTT
LOC_Os02g48450
Os.47737.1.S1_at--952--7971Chr02:29663631..29663655 (25 bp)
GGATGCTTCGGAGTGGAGCTCTTAA
LOC_Os02g48450
Target Sequence 
GGAAGACTACCCATACCTCATGGAAGANGNNTNCTGCAGAGAAAAGCAGCCTCANTCCAAAGTCATCACCATAACCGGCT
ACGAGGATGTCCCGGNGAACAGCNAGACAAGCCTACTGAAGGCACNGGCTCATCAGCCTGTCAGTGTGGGGATAGCAGCT
GGGAGCAGAGACTTTCAGTTCTACAAAGGGGGGATCTTTGATGGGGAATGTGGCATTCAACCGGATCATGCACTGACGNC
CGTGGGCTACGGCTCGTACTACGGCCAGGACTACATCATCATGAAGAACTCGTGGGGCAAGAACTGGGGAGAGCAAGGGT
ATTTCAGGATCAGGAGGGGCACCGGCAAGCCGGAGGGAGTCTGTGACATNTACAAGATTGCTTCTTACCCAACCAAAAAC
GTCACTGGCTGGGGTTCATAGCTAGTTTTGTAGGCGATCTTGTAATCCATTTGTCTCTGACAAGAAAGAACCGGCCTAAG
CAACGCTGTGCAATTCCTGGATGCTTCGGAGTGGAGCTCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis