Browse Element(s) Details


Os.47753.1.S1_at

Description gb:NM_194724.1
DB_XREF= gi:37530807
TID=Os.47753.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47753 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNAb0072F04.15), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0411011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04060OsAffx.30270.1.S1_at11/1110+1855157..1859683NB-ARC domain containing protein
LOC_Os10g04074Os.35046.2.S1_x_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.35046.1.S1_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.14086.1.S1_s_at11/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04074Os.46478.1.S1_at10/1110+1864083..1871881retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g04090Os.46735.1.S1_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_s_at11/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04090OsAffx.8602.1.S1_x_at6/1110+1874201..1878141NB-ARC domain containing protein, expressed
LOC_Os10g04100NANA10+1880224..1880581hypothetical protein
LOC_Os10g04110Os.47753.1.S1_at11/1110+1881932..1886668NB-ARC domain containing protein, expressed
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47753.1.S1_at--210--2731Chr10:1884528..1884552 (25 bp)
AAGCACAGGATTCCCATGTCTCAAG
LOC_Os10g04110
Os.47753.1.S1_at--981--3611Chr10:1884562..1884586 (25 bp)
CTTGTTTGCGGCGATCACGATGGTG
LOC_Os10g04110
Os.47753.1.S1_at--1004--7491Chr10:1884584..1884608 (25 bp)
GTGGAGCGTACCTAACATTTGGGAA
LOC_Os10g04110
Os.47753.1.S1_at--1029--5391Chr10:1884630..1884654 (25 bp)
GAAGCTTGAGATTCCATTTCACGTA
LOC_Os10g04110
Os.47753.1.S1_at--1054--8991Chr10:1885189..1885213 (25 bp)
TGAAGATTACGGTCATGGGCCATCC
LOC_Os10g04110
Os.47753.1.S1_at--987--8652Chr10:1885204..1885228 (25 bp)
TGGGCCATCCGCATCAAGACGTCTT
LOC_Os10g04110
Os.47753.1.S1_at--628--9071Chr10:1885248..1885272 (25 bp)
TGCTAGCAAGTTCAACAGCCTCCAA
LOC_Os10g04110
Os.47753.1.S1_at--517--7631Chr10:1886452..1886476 (25 bp)
GGGACTGTACGTTCTGATACCGAGT
LOC_Os10g04110
Os.47753.1.S1_at--702--4071Chr10:1886472..1886496 (25 bp)
CGAGTCTGCGGTGGCTGCAATCAAG
LOC_Os10g04110
Os.47753.1.S1_at--734--3531Chr10:1886521..1886545 (25 bp)
CATCCTAGACTTGCCATCTTCGGAG
LOC_Os10g04110
Os.47753.1.S1_at--614--7971Chr10:1886607..1886631 (25 bp)
GGATGACGATGCTACTGACACCTGA
LOC_Os10g04110
Target Sequence 
AAGCACAGGATTCCCATGTCTCAAGGAGTTTCTCCTTGTTTGCGGCGATCACGATGGTGGAGCGTACCTAACATTTGGGA
AAGGGGCTATGCCAAAGCTGGAGAAGCTTGAGATTCCATTTCACGTATTAATGGCAAAATCCCATGGGAAAGGAAGCCCC
AAAGGAGGGAGGGCCACTGAAGATTACGGTCATGGGCCATCCGCATCAAGACGTCTTCAATATGGATTTAACAAAGTGCT
AGCAAGTTCAACAGCCTCCAACGCCCTTCGGGGGAAAGAAGCCCCTAAGGGGGGAGGGCTGCTAAACAATGTGGCCAAGA
CAACCAGGGGACTGTACGTTCTGATACCGAGTCTGCGGTGGCTGCAATCAAGAGAGAAGCAAGTGCAAATCCCAACCATC
CTAGACTTGCCATCTTCGGAGCAGATGCAGAAGAGGTCCAAGAGGATAATAGCGAAGAGAGTGATTATAACTGGGGTTCA
GAGGATGACGATGCTACTGACACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis