Browse Element(s) Details


Os.4776.1.S1_at

Description gb:AK101703.1
DB_XREF= gi:32986912
TID=Os.4776.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033060F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033060F03, full insert sequence.
FL= gb:AK101703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2819011/11RanBP1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28180Os.9020.1.S1_at11/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28180OsAffx.14859.1.S1_x_at10/115+16399487..16407399AMP deaminase, putative, expressed
LOC_Os05g28190Os.4776.1.S1_at11/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28190Os.18091.1.S1_at1/115+16424800..16428468RanBP1 domain containing protein, expressed
LOC_Os05g28200Os.11399.1.S1_at11/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28200Os.49613.1.S1_at1/115+16433932..16439703chlorophyll synthase, ChlG family protein, expressed
LOC_Os05g28210Os.12812.1.S1_at1/115+16440849..16441243Embryonic abundant protein 1, putative
LOC_Os05g28220OsAffx.27056.1.S1_at11/115+16450431..16451276hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4776.1.S1_at--836--8271Chr05:16425306..16425330 (25 bp)
GGCGAAAAAGGCGTCCGGCACACTC
LOC_Os05g28190
Os.4776.1.S1_at--543--5471Chr05:16425270..16425294 (25 bp)
GAACTCCCCGAAGGCATCAGATGAT
LOC_Os05g28190
Os.4776.1.S1_at--652--1611Chr05:16425192..16425216 (25 bp)
AGCTGAGATACGCTTCTTGTTCTTT
LOC_Os05g28190
Os.4776.1.S1_at--559--1731Chr05:16425138..16425162 (25 bp)
ACCATGTCACTACGCTGCCTTAAGA
LOC_Os05g28190
Os.4776.1.S1_at--417--6351Chr05:16425109..16425133 (25 bp)
GATGCGCTTGCATACGGTTTCCTGT
LOC_Os05g28190
Os.4776.1.S1_at--783--6831Chr05:16425093..16425117 (25 bp)
GTTTCCTGTCGCTGTTTTTGGAACA
LOC_Os05g28190
Os.4776.1.S1_at--295--1311Chr05:16425011..16425035 (25 bp)
AGATGAGACTCCTATTGCCTACTGT
LOC_Os05g28190
Os.4776.1.S1_at--114--611Chr05:16424957..16424981 (25 bp)
ATGCCGCTGAGTGTTTGATATTCTA
LOC_Os05g28190
Os.4776.1.S1_at--688--3191Chr05:16424912..16424936 (25 bp)
CAATCGGTGTTGTACTGGTGTATCA
LOC_Os05g28190
Os.4776.1.S1_at--955--8751Chr05:16424887..16424911 (25 bp)
TGTATCCGTGATCTGCAGCGTCAGC
LOC_Os05g28190
Os.4776.1.S1_at--1125--9951Chr05:16424855..16424879 (25 bp)
TACCTTTACCTTCTACTGTTGCTGA
LOC_Os05g28190
Target Sequence 
GGCGAAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGCATCAGATGATTGAAGGTTGAAGCCCAACT
CTCGCCACAATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAA
CATACCGTACCATGTCACTACGCTGCCTTAAGATGNTGATGCGCTTGCATACGGTTTCCTGTCGCTGTTTTTGGAACAGT
GGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGT
GATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAATCG
GTGTTGTACTGGTGTATCATGTATCCGTGATCTGCAGCGTCAGCGTCGCCTTACCTTTACCTTCTACTGTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis