Browse Element(s) Details


Os.47782.1.S1_at

Description gb:AK102723.1
DB_XREF= gi:32987932
TID=Os.47782.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105J16, full insert sequence.
FL= gb:AK102723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5298010/11CwfJ C-terminus 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52940NANA3+30319513..30320025hypothetical protein
LOC_Os03g52950OsAffx.20261.1.S1_at1/113+30322351..30325665retrotransposon protein, putative, unclassified
LOC_Os03g52960OsAffx.25694.1.S1_at11/113+30326173..30326811hypothetical protein
LOC_Os03g52970Os.33154.2.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.15137.1.S1_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52970Os.33154.1.S1_s_at11/113+30332090..30336489Deoxyhypusine synthase, putative, expressed
LOC_Os03g52980Os.47782.1.S1_at10/113+30337025..30342401CwfJ C-terminus 1 containing protein, expressed
LOC_Os03g52990OsAffx.3593.1.S1_at11/113+30342863..30343285hypothetical protein
LOC_Os03g53000Os.53279.1.S1_at11/113+30346063..30348780double strand break repair protein, putative, expressed
LOC_Os03g53010NANA3+30352380..30353171Fatty acid desaturase family protein
LOC_Os03g53020Os.7116.1.S1_at10/113+30357240..30359856Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g53024NANA3+30359794..30359903NA
LOC_Os03g53030OsAffx.25695.1.S1_at11/113+30361011..30361253expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47782.1.S1_at--561--711Chr03:30341742..30341766 (25 bp)
ATGATTGAATGCATCCCTATCCCCT
LOC_Os03g52980
Os.47782.1.S1_at--843--5331Chr03:30341769..30341793 (25 bp)
GAAGTTTCAAACAATGCTCCCATGT
LOC_Os03g52980
Os.47782.1.S1_at--1021--3011Chr03:30341781..30341805 (25 bp)
AATGCTCCCATGTACTTCAAGAAGG
LOC_Os03g52980
Os.47782.1.S1_at--584--5291Chr03:30341915..30341939 (25 bp)
GAATGGACCCAGCATGACATGAAGA
LOC_Os03g52980
Os.47782.1.S1_at--940--5071Chr03:30341965..30341989 (25 bp)
GCACCAAGTCATCCCAGAGAACTTT
LOC_Os03g52980
Os.47782.1.S1_at--591--1351Chr03:30341980..30342004 (25 bp)
AGAGAACTTTGCCTACTTTCATGTA
LOC_Os03g52980
Os.47782.1.S1_at--491--10331Chr03:30341996..30342020 (25 bp)
TTTCATGTAGAGTTCGGGCTCGACC
LOC_Os03g52980
Os.47782.1.S1_at--589--7571NONE
GGGCTCGACCGTGGATTTGTCCATG
NONE
Os.47782.1.S1_at--357--3551Chr03:30342082..30342106 (25 bp)
CATCAGAGGGATGCTCCAGTTGCGG
LOC_Os03g52980
Os.47782.1.S1_at--1119--9011Chr03:30342117..30342141 (25 bp)
TGCACAGGCGCCGAAGGCATGAATC
LOC_Os03g52980
Os.47782.1.S1_at--743--5591Chr03:30342367..30342391 (25 bp)
GAAATTGACATCAACCCCGGCCATA
LOC_Os03g52980
Target Sequence 
ATGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCAATTGATGAAGCGGA
AGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAGGGAAACCTGCACCAAGTCATCCCAGAGAACTTTG
CCTACTTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTT
GGGTTGAATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCATGAATCGATGGATAA
TCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGANCCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATAC
AGTCACCANGAACCTCTGTAAGAACAGCCTNCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTC
ATGTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACATCAACCCCGGCCA
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis