Browse Element(s) Details


Os.4789.1.S1_at

Description gb:AK058961.1
DB_XREF= gi:32968979
TID=Os.4789.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.4789 (NCBI UniGene Cluster)
UG_TITLE=Cystathionine gamma-synthase (CGS1) mRNA, partial cds; nuclear gene for chloroplast product
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-B12, full insert sequence.
FL= gb:AK058961.1 gb:AK060421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2594011/11Cys/Met metabolism PLP-dependent enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25910OsAffx.3329.1.S1_at11/113+14811018..14811771hypothetical protein
LOC_Os03g25920OsAffx.13037.1.S1_x_at11/113+14815095..14817884Amino acid permease family protein
LOC_Os03g25930Os.50934.1.S1_at10/113+14822585..14826107emp24/gp25L/p24 family protein, expressed
LOC_Os03g25940Os.4789.1.S1_at11/113+14829048..14833256Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os03g25950OsAffx.13038.1.S1_at11/113+14842108..14844277hypothetical protein
LOC_Os03g25960Os.30049.1.S1_at11/113+14845419..14847519RNA recognition motif family protein, expressed
LOC_Os03g25970Os.27508.1.S1_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25970Os.27508.1.S2_a_at11/113+14850789..14855418KH domain-containing protein, putative, expressed
LOC_Os03g25980Os.7952.1.S1_at11/113+14857514..14862345Polypyrimidine tract-binding protein homolog 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009086biological_processmethionine biosynthesis
GO:0019279biological_processmethionine biosynthesis from L-homoserine via cystathione
GO:0009507cellular_componentchloroplast
GO:0003962molecular_functioncystathionine gamma-synthase activity
GO:0004121molecular_functioncystathionine beta-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4789.1.S1_at--812--1251Chr03:14830123..14830147 (25 bp)
AGATTGCACGTGTCTACTATCCTGG
LOC_Os03g25940
Os.4789.1.S1_at--251--4271Chr03:14830054..14830078 (25 bp)
CCGGCTTTGGTGGTGTCATTAGTTT
LOC_Os03g25940
Os.4789.1.S1_at--504--8791Chr03:14829902..14829926 (25 bp)
TGTTAAGATACCCTATCATGCCCCA
LOC_Os03g25940
Os.4789.1.S1_at--1079--1351Chr03:14829861..14829885 (25 bp)
AGAGCATTATTGATCAGCCTGCCAT
LOC_Os03g25940
Os.4789.1.S1_at--124--3831Chr03:14829762..14829867 (25 bp)
CTGCCATCATGTCTTACTGGGATTC
LOC_Os03g25940
Os.4789.1.S1_at--242--8151Chr03:14829707..14829731 (25 bp)
GGACAACTTGATCAGGTTCAGCATT
LOC_Os03g25940
Os.4789.1.S1_at--357--2991Chr03:14829655..14829679 (25 bp)
AATGACGTTGTTCAGGCGCTTGACA
LOC_Os03g25940
Os.4789.1.S1_at--9--6431Chr03:14829629..14829653 (25 bp)
GATCTAAGCACCTGATTGCATCCTC
LOC_Os03g25940
Os.4789.1.S1_at--1070--6011Chr03:14829599..14829623 (25 bp)
GAGAGTTCATCTATCTGATCTTGTT
LOC_Os03g25940
Os.4789.1.S1_at--187--10811Chr03:14829579..14829603 (25 bp)
TTGTTTGCCTCTGCATCACGTGGAG
LOC_Os03g25940
Os.4789.1.S1_at--389--1211Chr03:14829522..14829546 (25 bp)
AGTTTCTTCATTAGTTCCCATTATC
LOC_Os03g25940
Target Sequence 
AGATTGCACGTGTCTACTATCCTGGTCTGCCAAGTCACCCAGAACATCACATTGCCAAGAGTCAGATGACCGGCTTTGGT
GGTGTCATTAGTTTTGAGGTTGCTGGAGACTTTGATGCTACTAGGAGATTTATTGATTCTGTTAAGATACCCTATCATGC
CCCATCATTTGGGGGCTGTGAGAGCATTATTGATCAGCCTGCCATCATGTCTTACTGGGATTCAAAGGAGCAGAGAGAAA
TCTATGGAATCAAGGACAACTTGATCAGGTTCAGCATTGGAGTGGAGGATTTTGAGGATTTGAAGAATGACGTTGTTCAG
GCGCTTGACAAGATCTAAGCACCTGATTGCATCCTCATCATGAGAGTTCATCTATCTGATCTTGTTTGCCTCTGCATCAC
GTGGAGAACTTTGATATTCCAGCTGAGAATTGCGAATAAGTTTCTTCATTAGTTCCCATTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis