Browse Element(s) Details


Os.47915.1.S1_at

Description gb:AK122163.1
DB_XREF= gi:37991809
TID=Os.47915.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147H01, full insert sequence.
FL= gb:AK103661.1 gb:AK122163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3602011/11major intrinsic protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed
LOC_Os08g36030Os.55819.1.S1_at10/118+22578497..22579770Plant viral-response family protein, expressed
LOC_Os08g36040OsAffx.2532.2.S1_at11/118+22582566..22583492Plant viral-response family protein, expressed
LOC_Os08g36050OsAffx.29547.1.S1_at11/118+22585660..22586944hypothetical protein
LOC_Os08g36060Os.46578.1.S1_x_at11/118+22588314..22588915expressed protein
LOC_Os08g36060Os.46578.1.S1_at11/118+22588314..22588915expressed protein
LOC_Os08g36070Os.47463.1.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36070Os.14491.2.S1_x_at5/118+22595189..22598886transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47915.1.S1_at--465--8771Chr08:22573649..22573673 (25 bp)
TGTATACATCACCATTCGGGCCTTG
LOC_Os08g36020
Os.47915.1.S1_at--825--6851Chr08:22573681..22573705 (25 bp)
GTATTAGAGAGCTCCGACGGGTCCG
LOC_Os08g36020
Os.47915.1.S1_at--904--3951Chr08:22573698..22574195 (25 bp)
CGGGTCCGATTCAGCCGGGAGAAAT
LOC_Os08g36020
Os.47915.1.S1_at--446--2251Chr08:22574192..22574216 (25 bp)
AAATTCAGCGAGATGCACGCCAGGC
LOC_Os08g36020
Os.47915.1.S1_at--846--9551Chr08:22574293..22574317 (25 bp)
TCTTTACCACTTCATCTCATTGCAA
LOC_Os08g36020
Os.47915.1.S1_at--963--5191Chr08:22574314..22574338 (25 bp)
GCAATTGACCACCAGAGTCCATTGA
LOC_Os08g36020
Os.47915.1.S1_at--69--1231Chr08:22574345..22574369 (25 bp)
AGTTCGGTGCAATTGACCGCCGTCT
LOC_Os08g36020
Os.47915.1.S1_at--445--6531Chr08:22574383..22574407 (25 bp)
GATTTCGAAGCGCTTCTTCTTTCAC
LOC_Os08g36020
Os.47915.1.S1_at--843--251Chr08:22574441..22574465 (25 bp)
ATATCGTCAGGAATTACTCCCAGCC
LOC_Os08g36020
Os.47915.1.S1_at--964--6811Chr08:22574558..22574582 (25 bp)
GTTTATGCGGTAATCCGCCTGTTTC
LOC_Os08g36020
Os.47915.1.S1_at--466--3711Chr08:22574627..22574651 (25 bp)
CTAGATTATTTACTTCGCAGCGAAA
LOC_Os08g36020
Target Sequence 
TGTATACATCACCATTCGGGCCTTGCCTGGTGGTATTAGAGAGCTCCGACGGGTCCGATTCAGCCGGGAGAAATTCAGCG
AGATGCACGCCAGGCTATGGTGGGAAGAGAACCGGGCAAGGATACATGATCAGTATCTCTGAGAAGACATGCNAATCATN
TATCAGCAANTTCTTTACCACTTCATCTCATTGCAATTGACCACCAGAGTCCATTGAACTTACAGTTCGGTGCAATTGAC
CGCCGTCTCCTGGAGATATTTGATTTCGAAGCGCTTCTTCTTTCACCCTCCTCCAGCGTGTACATCAAACACTAACATCA
TATCGTCAGGAATTACTCCCAGCCTGTGCAAAAATTGGCCGAGGAACACTGCTTGCATGTGTGANTGTGTGAGCTTTTAG
TGTTTATTCTTGATGTCTAACATTTAATTTGCTCNTGTTTATGCGGTAATCCGCCTGTTTCTCTCCAATNCATTGTCACN
AAATTTATACAGTTTGGTATAACTGCTAGATTATTTACTTCGCAGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis